Thermococcus chitonophagus: CHITON_1840
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Entry
CHITON_1840 CDS
T04536
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase @ intein-containing
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tch
Thermococcus chitonophagus
Brite
KEGG Orthology (KO) [BR:
tch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tch03016
]
CHITON_1840
Enzymes [BR:
tch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CHITON_1840
Transfer RNA biogenesis [BR:
tch03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CHITON_1840
Prokaryotic type
tRNA splicing ligases
CHITON_1840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
CUX78619
UniProt:
A0A160VUT2
LinkDB
All DBs
Position
I:complement(1707036..1709912)
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AA seq
958 aa
AA seq
DB search
MVVPLKRIDKIRWEIPKFDRRMRVPGRVYADEVLLEKMKSDRTLEQAANVAMLPGIYKYS
IVMPDGHQGYGFPIGGVAAFDVREGVISPGGIGYDINCLSPGTKVLTEHGYWVKIEAMPS
TFKLQGLKVYNIDEGHNDSSPVVFVAERKVEENEVAVRIVTETGRTIEGSEDHPVLTPSG
YIYMGNIREGDYIIVYPFEGVEFEKKEGVILSEDDFKDVDPQILKFLKERGLIPLRWNDP
KVGILARILGFAFGDGHLGYMGDRIYISFYGTEEAMNELKKDLEKLGINATLYVREREYE
IGKYRGISKSAELRVTSRAFVVLLMKLGMPIGKKVEVEYSLPGWIKEAPLWIKRNFLAGL
FGADGSVVEFKRYTPISINLTQSKVPDLRDNLEAFLSEVADLLREFGVNSMIYEVSSDKT
VTLRLAIVEEDSIKNFLGRINYEYAPEKKVRGLLGYAYLVRKQLVKEERKEAARIARKVY
EKTGSLKAAYEAVADKVNKRFVERVIYSGTEEGRVPQNFPTFEEFVREFGYEGGFVAERV
VKVEKIRPTYDKFYDIGVYHEAHNFIANGAVVHNCGVRLIRTNLTEKEVRPKIKQLVDTL
FKNVPSGVGSQGRIRLHWTEIDDVLVDGAKWAVDHGYGWGRDLERLEEGGRMEGADPNAV
SQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEIAKVYGLFEGQVVVMVHTGSRGLGHQ
VASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWV
RESFQEVFRQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPPGHEA
VPRIYRDVGQPVLIPGSMGTASYVLAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDR
IRNELLQRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARLRPIGVAKG
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgccattaaagagaattgataagatcaggtgggaaattccaaagttcgataga
aggatgcgcgttcctgggagagtttatgctgatgaagttctccttgagaaaatgaagagt
gataggacgcttgaacaggcagcgaacgttgcaatgcttccgggcatatacaagtattca
atagtaatgcctgatggtcatcagggctatggtttccctattggaggagttgcggctttt
gacgtcagagaaggtgtaataagccccggaggcataggttacgatatcaattgcctttcc
ccaggaaccaaggttctcacggaacatggctactgggtaaaaattgaggccatgccttca
acatttaagcttcaggggcttaaggtatataacatagacgaggggcacaatgacagctca
cccgtggtgttcgtggctgaaagaaaagttgaggagaatgaagttgcagttaggatagtc
accgagaccggaagaacaatagagggcagtgaagaccatcccgtactgactccctccggc
tatatatacatgggcaacataagggagggcgattacattatagtgtacccattcgaggga
gttgaattcgagaagaaggaaggtgttatactgtcagaggacgacttcaaagacgttgat
ccccagatactgaagttccttaaagagagaggattaatccccctcagatggaacgatcca
aaggttggaattctggcaaggatcctgggctttgcatttggtgatggccatttaggctac
atgggtgacagaatatacatctcgttctatggaactgaagaggcaatgaatgagctcaaa
aaagacctagagaagctgggaataaatgccaccctctacgtgagggagagagagtacgag
attggaaagtacagggggatctctaagtccgcagagcttagggtaacctctagggcattt
gttgtgttgctaatgaagcttggaatgcctatagggaagaaggttgaggttgaatattct
ctcccaggatggataaaagaggctcccctgtggataaagaggaatttcctcgcaggcctc
ttcggtgctgacggtagcgtcgttgagttcaagaggtacactccaatctcaattaacctg
acccaatccaaggttccagatctcagggacaaccttgaggcgtttctaagtgaagtcgca
gaccttctcagagaatttggtgttaactcaatgatttatgaagtttcttctgacaaaacc
gttactctgagacttgccatagttgaagaggacagcataaagaacttccttggcaggata
aactatgaatatgctccagagaagaaagtaagaggtttgcttggatatgcatacttagtt
aggaagcagctcgtaaaggaggaaagaaaggaagcagcaaggatcgcacgtaaagtctat
gaaaagacaggtagcttaaaagctgcttatgaggccgttgctgacaaagtcaacaagaga
ttcgttgagagggtaatatactcaggaacagaagagggtagagttccgcagaacttcccg
acgtttgaagaattcgtccgagagtttggctatgagggaggctttgtggctgagagagta
gttaaggtcgagaagataaggcccacttacgacaaattctatgacatcggagtctatcac
gaggcccacaacttcatagcaaatggtgctgttgttcacaactgcggtgtcagactgatt
agaacgaatttaacggaaaaagaagtgagaccaaagataaagcaactcgtagataccttg
tttaagaacgttccttctggtgttggtagtcaaggtaggataagacttcactggacggaa
atagatgatgttctagtggatggtgcaaagtgggcagttgatcatggttacggatggggg
agggatttagagaggcttgaagaaggaggaagaatggaaggggctgatcctaacgcggtg
agtcagagggcaaagcagagaggtgctccccaattaggttccctaggttcaggaaatcat
ttcctcgaggttcaagtggtagacaagatatttgatcccgaaatagctaaggtttatggc
ctctttgagggccaagtcgtggttatggttcacacgggttcaagaggtcttgggcatcag
gttgctagtgattacctcaggataatggagagggctattagaaagtacaggataccatgg
ccagacagggaactcgtcagcgttccattccagagtgaggagggacaaaggtacttctcc
gcaatgaaagcggcagcaaacttcgcctgggctaacaggcagatgataacccactgggtt
agggagagtttccaggaagtctttaggcaagaccctgaaggagaccttggaatggacata
gtttacgatgttgcccacaacataggtaaggttgaagagcatgaggttgatggcaagaag
gttaaggtgatagttcacaggaagggcgcaacaagggcattcccaccaggacacgaagcc
gttccgaggatttacagagatgttggtcagcctgtccttatcccaggatccatgggtacc
gcgagctatgtcttagccggaactgagggtgcaatgaaggaaaccttcggctcaacatgc
cacggcgctggaagggtactcagcagaaaggccgcaacaaggcagtacaggggagacaga
ataaggaacgagttactccagaggggaatttacgtgagagctgcctcgatgagggtagtt
gcggaggaggccccaggagcttacaagaacgtggacaacgttgttaaagtagttagcgag
gcaggaattgcaaagctcgttgctagattgaggcctataggagttgccaagggctga
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