Tatumella citrea: A7K98_07515
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Entry
A7K98_07515 CDS
T04873
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tci
Tatumella citrea
Pathway
tci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7K98_07515 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tci03019
]
A7K98_07515 (rne)
03009 Ribosome biogenesis [BR:
tci03009
]
A7K98_07515 (rne)
Enzymes [BR:
tci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A7K98_07515 (rne)
Messenger RNA biogenesis [BR:
tci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A7K98_07515 (rne)
Ribosome biogenesis [BR:
tci03009
]
Prokaryotic type
rRNA processing factors
A7K98_07515 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ARU93637
UniProt:
A0A1Y0LIQ7
LinkDB
All DBs
Position
complement(1594579..1598022)
Genome browser
AA seq
1147 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYSMHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKREAVNAIETRQGGVRAIIVPDDRME
TPHYSVLRVRKGEETKTLSYHLPKLHEIEVAAISDEEPAERRRPEQPALAAFAMTEAPPT
ITEAPVVPVAAEQVPAAKGSCIFSRLLKGLKNLFGGSEKETVSEAPAKAETPARNSENAS
SANRNDRRRNNRNNRNDRNDRNERTDRNDRNDRNDRNERTDRNNEQKTDRNERTERNDRN
ERSGQTRTNDNANSQDNRRNNNRRNTVATENREETQPTRQNTPLTDEARQQREQQRREQR
AERQRRRQEERRQQQEATAPEQPTVVAEVQTNEAAAVEEPVQISVRRKQRTLTQKVRYGV
EETRDTAPAEVAATTETTVVGDDVVAVESAREDGQENRDNNGNIPRRSRRSPRHLRVSGQ
RRRRYRDERYPQQSAMPLETAVASPELASGKVWISYSAPVLQDEFVQSEDLQDQPVNETV
VEPVVADVVTTSLPAAPQPDSVPEVAEAAATETPVVAEPASTLPAASAAQEVVSAEESTP
VATDAPVVSESVTSAETVVPEPAQSEVVATETASQPSPVADSPASTEVEVVPATAEVNAP
AETAAAEVVEAPEVTAVPEAVESAPETEEVRSVVAETPAAVTAEPEAPAPAPQEAKTAPV
AATVAAPTTKPRFHATAPMTRAPAPEWVAEPPRHSDWVRPVYDFAGKGAAGGHTASHHAT
APVTKAS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgctactcagcaggaagagttgcgtgtcgcccttgtagat
ggacaacgtctgtatgatctggatattgaaagtcctggccatgaacagaaaaaggcaaat
atttataaaggcaaaatcacccgtattgaacccagtcttgaagctgcatttgtagattac
ggcgctgaacgtcacggtttcctccctctgaaagaaatctcccgcgaatacttccctgcc
aattattccatgcacggccgtccgaatatcaaggatgtgttacgtgaaggtcaggaagtt
atcgtccagatagacaaagaagagcgcggaaataaaggcgcagcactgacaacctttatc
agcctggcgggcagttatctggtgctgatgcccaataatccgcgggcaggtggcatttcc
cgtcgtatcgagggtgatgaccgtactgaactgaaagaagcgctctcttcactacagtta
ccggaaggtatggggctgattgtccgtactgccggggttggaaaatctgcagaagcactg
caatgggatctcagttttcgtctgaaacactgggaagcgattcagaaagctgccgaaaac
cgccctgctccgtttctgatccatcaggaaagtaatgttatcgttcgtgccttccgcgat
tatctgcgccaggacatcggtgaaattctgattgataacccgaaagtactggaactggca
cgtcagcatatcgcagctctcggtcgtcctgatttcagcagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccattatcagattgagtcacagattgaatctgcgttccag
cgtgaagttcgtctgccttccggtggttcgattgttatcgatagtaccgaggcactgaca
gccatcgatattaactccgcccgtgcaacccgtggtggcgatatcgaagaaaccgccttt
aataccaacctggaagccgccgatgaaattgcccgtcagttacgtctgcgtgacctgggt
ggtttaattgtcatcgactttatcgatatgacgccggtgcgtcatcagcgtgctgtagaa
aaccggctgcgcgaagccgtacgtcaggatcgtgcacgaattcagattagccatatctca
cgattcggcctgctggagatgtcccgtcagcgtctgagcccgtcactgggtgagtccagt
catcacgtctgcccgcgctgtagtggtaccgggactatccgtgataatgagtcgctgtca
ctctctattctgcgtctgattgaagaagaagcgctgaaagaaaacaccaaagaagttcat
gccattgtgccggtacagattgcctcttacctgctgaatgaaaagcgtgaagcggtcaat
gctatcgaaacccgtcagggtggagtgcgggcgattattgttcctgatgatcgtatggaa
actcctcactattcagtattgcgtgtacgtaagggtgaagagacgaaaactcttagctat
cacctgccgaaactgcatgaaatcgaagtggcagccatttccgatgaagagcctgctgaa
cgccgtcgccctgaacaaccagcgctggcagcttttgctatgacagaagcaccaccgaca
ataactgaagcaccggttgtgccggtagcagctgaacaagtgccagcagccaaaggcagc
tgtatctttagtcgtctgcttaaaggtctgaaaaatctgtttggcggttctgagaaagag
accgtcagtgaagctcctgccaaagcagagacgcctgcccgcaacagcgaaaacgcttct
tcggctaaccgtaacgaccgtcgtcgtaataatcgtaacaaccgtaacgatcgtaatgac
cgcaatgagcggactgatcgtaacgaccggaatgaccggaatgaccgtaacgaacgtact
gaccgtaataacgagcagaaaacggatcgtaacgaacgcaccgaacgtaacgatcgcaat
gagcgttcaggacagacccgcactaacgataatgccaacagccaggataaccgccggaat
aataaccgtcgtaacactgttgcgacagaaaatcgtgaagagacacagccgactcgtcag
aacacacctctgaccgacgaagcacgtcagcaacgcgagcaacaacgtcgtgagcagcgt
gctgagcgtcaacgtcgtcgccaggaagaacgtcgtcagcaacaggaagccaccgctccg
gaacagccgacagtggttgctgaggttcagactaacgaggcagctgccgtagaagaaccg
gtgcaaatcagcgttcgtcgtaaacagcgtactctgacacagaaagttcgttatggcgtc
gaagagacccgggacaccgctcctgctgaggtagccgcgacaacagaaaccacagtggtc
ggtgatgacgttgtggctgtagaaagcgcccgtgaagatggacaggaaaaccgtgataat
aacggcaatattcctcgtcgttcacgccgttctccacgccatctgcgcgtcagtggccaa
cgccgtcgtcgttatcgtgacgagcgttatccgcagcagtccgcaatgcctctggaaact
gccgttgcctctccggagttagcttccggtaaagtgtggatcagctattctgccccggtt
ctacaggatgaatttgttcagtctgaagacctgcaggatcaaccagtgaacgaaacagtt
gttgagccggtagtggctgatgttgttacaacatcgttgcctgcagcgccacagccagac
agcgtaccagaagtggcagaagccgctgcaactgaaacaccagttgttgctgaacctgcc
agtaccctgcctgctgcctctgcagctcaggaagtggtaagtgctgaggaaagtaccccg
gtcgctacggatgcacctgttgtcagcgagtctgtaacttctgctgagactgtagtgcct
gaaccggcacaatcagaggttgttgcaactgaaacggccagtcagccgtcaccggttgcc
gacagtcctgccagcactgaggttgaagttgttccggcaacagctgaagtgaatgccccg
gcagaaactgctgctgcggaagtggttgaagcgccggaagttacggcagtaccagaagct
gttgaatcagcccctgagactgaggaagtgcgctctgtggttgccgaaactccggcagca
gtcactgctgagccagaagctccggctccggccccacaggaagctaaaacagcaccggtc
gccgcaacagtagcggcaccgacgactaaacctcgtttccatgcgactgctccgatgacc
cgtgcaccggcacctgaatgggttgctgaaccaccgcgtcacagtgactgggtacgtccg
gtttatgatttcgcaggaaaaggtgctgcaggtggacataccgccagccatcatgcgact
gcaccagtaaccaaagcttcataa
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