Tatumella citrea: A7K98_18380
Help
Entry
A7K98_18380 CDS
T04873
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tci
Tatumella citrea
Pathway
tci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A7K98_18380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tci03021
]
A7K98_18380
03400 DNA repair and recombination proteins [BR:
tci03400
]
A7K98_18380
Enzymes [BR:
tci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A7K98_18380
Transcription machinery [BR:
tci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A7K98_18380
DNA repair and recombination proteins [BR:
tci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A7K98_18380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
ARU95531
UniProt:
A0A1Y0LNL0
LinkDB
All DBs
Position
complement(3911174..3915394)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAVQALLKGMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LHLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYSLNEQGELIPQTSLIDTTIGRAILWMIVPKGLPYSIINQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMENLQTETVINRHGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGSADILVARNTLLDEHWCDVLEQNSVDSVKVRSVVGCTTDFGVCAHCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
INAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGSVMAKGDGEQANAGETVANW
DPHTMPVITEVSGFLRFVDMNDGQTITRQTDELTGLSSIVVMDTAERTSGGKDLRPALKI
VDAKGNDVMLPGTDMPAQYFLPGNAIVQLDDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSSEFLEGEQAEVSRILIANRELEANGKIGATFHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHSGEAQV
TPQVTADEASASLAELLNAGLGGSDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctaaaagcgcaaactaaaaccgaagagtttgatgcgatc
aagatcgctctggcctcgccagatatgatccgttcctggtctttcggtgaagttaaaaag
ccagaaaccatcaactatcgtacctttaagccggaacgtgatggtctgttctgtgcgcgt
atctttggtccggtaaaagactatgagtgcctgtgcggtaagtacaagcgtctcaaacac
cgtggtgtgatctgtgagaagtgtggcgtagaagttacccagactaaagttcgtcgtgaa
cgtatgggtcacatcgagctggcttctcctacagcgcacatctggttcctgaaatcacta
ccatcccgtattggtctgttgttagacatgccactgcgtgatattgagcgcgtgctgtat
ttcgaatcttatgtcgttattgaaggcggcatgaccaacctcgaaaagcgccagattctg
actgaagagcagtatctggatgcacttgaagagtttggtgatgaattcgacgctaaaatg
ggtgcagaagcggttcaggccctgctgaaaggcatggatctggagcaggaatgcgaacag
ctgcgtgaagagctgaacgaaaccaattctgaaaccaagcgtaaaaagctgaccaagcgg
atcaaactgctggaagcctttgttcagtctggtaacaaaccagagtggatgattctgaca
gtactgccagtattgccaccggacctgcgtcctctggtaccactggacggtggccgtttc
gcgacttcagatctgaacgatctgtaccgtcgtgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcacctgacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtcgatgcattgctggataacggtcgtcgcggtcgtgcaattaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactccggtcgttcagtaatcaccgttggtccatac
ctgcacctgcatcagtgtggtctgcctaagaaaatggctctggaactgttcaaaccattt
atctatggcaagctggaactgcgtggcctggcaacgactatcaaagctgccaagaaaatg
gttgagcgtgaagaagctgtcgtctgggatatcctggatgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggctttcgaaccagta
ctgatcgaaggtaaagcgattcagctgcacccgttagtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagttagaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcaaacggtgaacctatcatc
gttccttcacaggacgtggtactgggtctgtattacatgacccgtgacagagtcaatggt
aaaggcgaaggcatggtcctgaccggacctaaagaagctgaacgcgtataccgtgcgggt
ctggcggagctgcatgctcgcgttaaagtccgtattaccgaatacagcctgaatgagcag
ggcgaactgatccctcagaccagcctgatcgatactactatcggtcgtgccatcctgtgg
atgatcgttccaaaaggtctgccatattcaatcatcaaccaggcattgggtaaaaaggca
atctctaagatgctgaatacctgctaccgtatcctgggtctgaaacctaccgtaattttt
gcggaccagaccatgtataccggttttgcttatgcagcccgttccggtgcatcagtaggt
attgatgatatggttatcccggccaaaaaagccgagatcatcagcgaagctgaagctgaa
gttgctgaaatccaggagcagttccagtcaggtctggttactgccggtgaacgttacaac
aaagtcatcgatatctgggctgcagctaacgaacgtgtttcaaaagcgatgatggaaaac
ctgcaaactgaaactgtgattaaccgtcacggtgaagaagaacagcaggtctctttcaac
agtatctatatgatggccgactccggtgctcgtggttctgctgctcagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttcaatcatcgaaacacctatcacg
gcaaacttccgcgaaggtctgaacgtactccagtacttcatatcgacgcacggtgcccgt
aaaggtctggccgataccgcactgaaaacagcgaactccggttatctgactcgtcgtctg
gttgacgttgctcaggatctggtggttaccgaagacgattgtggtacccacgaaggtatc
atgatgactccggttatcgaaggtggtgatgttaaagaaccactgcgcgaacgtgtactg
ggtcgtgtcaccgctgaagacgttctgaaaccaggttctgcagatattctggttgcccgt
aacactctgcttgatgagcactggtgtgacgtgttggaacagaactctgtcgacagcgtt
aaagtacgttctgtggttggttgtactaccgactttggtgtatgtgctcactgttatggt
cgtgacctggctcgtggtcatatcatcaacaaaggtgaagctgtcggtgttatcgcggca
cagtccatcggtgaacctggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtactattaagctt
atcaacgccaagtcggtaactaactcagctggcaagctggtaattacctcacgtaacgtt
gaactgaagatgatcgatgaattcggtcgtaccaaagaaagctataaagttccttacggt
tctgtgatggccaaaggtgatggtgagcaggcgaatgccggcgaaaccgtagctaactgg
gatccacataccatgccagttatcaccgaagtgagtggtttccttcgctttgttgatatg
aatgatggccagacaatcacccgtcaaacggatgagctgaccggtctgtcttcaatcgtg
gttatggatactgctgagcgtacttcaggtggtaaagatctgcgtccggcactgaaaatt
gtcgatgcgaaaggcaacgatgtgatgctgccaggtactgatatgcctgcacagtacttc
ctgcctggcaacgcgattgttcagctggatgacggcgtacaaatcagttccggtgatacc
ctggcgcgtgttcctcaggaatccggcggtactaaagatattaccggtggtctgccacgc
gttgctgacctgttcgaagctcgtcgtcctaaagagccggcgattctggcagaaatcagc
ggtattatttccttcgggaaagaaaccaaaggcaaacgtcgtctggtgatcacacctgtt
gatggcagcgaaccttacgaagagatgattccgaaatggcgtcagcttaacgtgtttgaa
ggtgagcgtgttgaacgtggtgacgtagtttccgacggacctgaatcaccgcacgacatt
ctgcgtctgcgtggtgttcatgcggtaacccgttatatcaccaacgaagttcaggatgtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgcctctgccggaagctctgagttcctggaaggcgaacaggct
gaagtttcacgtattctgattgctaaccgtgaactggaagcgaacggcaaaatcggtgca
actttccaccgtgacctgctgggtatcactaaagcttcactggcaaccgaatcgtttatt
tctgcggcatcgttccaggaaacgactcgtgtgctgaccgaagcagcagtggctggtaaa
cgcgatgaactgcgtggtctgaaagaaaacgtcatcgtgggtcgtctgatccctgccggt
acgggttatgcctaccaccaggatcgtatgcgccgtcgtcactcaggtgaagcacaggta
actcctcaggttacagcagatgaagcatctgccagcctggcagagttgctgaatgccggc
ctcggtggcagcgacgagtaa
DBGET
integrated database retrieval system
