Thauera chlorobenzoica: Tchl_1887
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Entry
Tchl_1887 CDS
T04612
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tcl
Thauera chlorobenzoica
Pathway
tcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Tchl_1887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcl03400
]
Tchl_1887
Enzymes [BR:
tcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Tchl_1887
DNA repair and recombination proteins [BR:
tcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Tchl_1887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APR04734
UniProt:
A0A1H5XBB4
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All DBs
Position
2030221..2034138
Genome browser
AA seq
1305 aa
AA seq
DB search
MSAPHSMTPAAGGGAPLDPLRFPLHGQRLIEASAGTGKTFTIAALYVRLVLGHGGADAFA
RALAPPEILVVTFTEAATKELRERIRARLAEAAAAFLPAPQGEGAQGEGPTAVDDDFLAR
LRADHAPEHWPACARKLQLAAEWMDEAAVSTIHGWCKRMLREHAFASGSLFTQTLEADQG
ELLAEAVRDYWRTFIVPLDAAQAAEVAHWWSGPQALQQALERLVGHAAALEASAPRSAPA
ALLGQAAAERERRLAALKAPWPGWADELQALLERAVAGACVNGQKLRAQYYLPWLDKLRA
WAGDPGAVHLELGTGWTRLTPAGLADAWKADKGAPPSHPALEAVAALPAALAALPDAFGD
LLRHAACWVAARFAAEQQRRAQMGFDDLLTRLDRALQGDNGAGLAERIRSTFPVALIDEF
QDTDPVQFRIFDAVYGVTRAGADPHSRAGMPSALVLIGDPKQAIYAFRGADIFTYLAARR
ACAGRRYTLGRNFRSTAPMVAAVNRCFGFAEARSAGAGAFLFRPPGASPDDNPLPFIPAA
AQGRKETLEIDGRPVAALTAWWLAAREDGKSLPKGAYREQMAAACASAMVRLLNRGRAGA
AGFVAGTGFAALRPRDLAVLVHTRDEADAIRAALAVRGVRSVYLSDRDSVFDSARAEELQ
HWLAACAEPDDARLLRAALATATLGLDWAALDGLDRDERAWEARVLQFRGYRELWRRQGV
LPMLRRLLHDFDVPARLLGAAAVNGGERALTDLLHLAELLQQASAVLDGEHALIRHLARQ
RQPGARTGSGDEGRQIRLESDADLVQVVTVHKSKGLEYPLVFLPFACSWRRVGAADRPLT
VHDAGGRAQLLLCADEDTLARADRERLGEDLRKLYVALTRARHATWVGLAPLDELEHSAF
GYLLAGGAPIAPAALEAHLRALKGEADCIAVAPAPEPTAERYAAPGADAVPGPARRPRRS
VREHWWIASYSALKTGGHGDGLPPAVADTVADAIADAVAEAEARGVRPPAAPDSAAEATF
HETLHATPLLAAPPHSVPAQGAGLHAFPRGAEAGTFLHELLEWAAERGFASLAADPGGLR
DTVARRCRMRGWEAWIGPLTAWLEHFLAAELALPAAPGRAATRLRLAGLGAVVAEMEFWL
TVDTLDTRVLDRLVCAHTLDAAARPALLPDTLGGMLKGFIDLLFEHEGRFYVADYKSNWL
GADDGAYTAAAMRAAVLAQRYELQYTLYLLALHRLLQARLPGYDYDRHVGGALYLFLRGS
RAPGAGVHFERPPKALIETLDRLFAGTGAVGGGGAVAARLAEGSE
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgccgcactccatgacgccggcggccggtggcggcgctcccctcgatccactg
cgcttcccgctccacggccagcgcctgatcgaggccagcgccggcaccggcaaaaccttc
accatcgccgcgctgtacgtccgcctggtgctgggccacggcggcgcggatgcgttcgcg
cgtgccctcgcgccgcccgagatcctcgtcgtcacgttcaccgaagcggcgaccaaggag
ctgcgcgagcgcatccgcgcccgcctcgccgaagccgccgcagccttcctccccgcgccg
cagggggagggggcgcagggggaggggccgacggcggtggatgatgacttcctcgcccgc
ctgcgcgccgaccatgctcccgagcactggccggcctgcgcgcgcaagctgcagctcgcc
gcggagtggatggacgaggccgcggtatcgacgatccacggctggtgcaagcgcatgctg
cgcgagcacgcgttcgccagcggcagcctgttcacccagaccctggaggcggaccagggc
gaactgctggccgaagccgtgcgcgattactggcgcaccttcatcgtccccctcgatgcc
gcgcaggccgccgaagtcgcgcactggtggagcgggccgcaggccctgcagcaggccctc
gagcgcctcgtcgggcacgccgcggcgctcgaagcgtcggctccgcgcagcgcgcccgcg
gcgctgctcggccaggcggcggccgaacgggagcgccgcctggctgcgctgaaagcgccc
tggccgggctgggcggacgaactgcaggccctgctcgagcgggcggtggccggcgcctgc
gtcaatggacagaagctccgggcgcagtattacctgccctggctcgacaagctgcgcgcc
tgggcgggcgacccgggggcggtccacctcgagctgggcacggggtggacgcggctgacg
ccggccggactggccgatgcctggaaggcggacaagggcgcgccgccgtcgcaccctgcg
ctggaggcggtcgccgcgctgccggcggcgctggcggccttgcccgacgcctttggcgac
ctgctgcgccatgccgcgtgctgggtcgccgcgcgcttcgccgccgagcagcagcgccgt
gcgcaaatgggcttcgacgatctgctgacgcggctcgatcgtgcgctgcagggcgacaac
ggtgcgggcctcgccgagcgcatccgcagcacgttcccggtggcgctgatcgacgagttc
caggacaccgacccggtgcagttccgcatcttcgacgcggtgtacggggtgacccgggcg
ggcgcggacccgcactccagagccgggatgccgtccgcgctggtattgatcggcgacccc
aagcaggcgatttacgctttccgcggcgccgacatcttcacctacctcgccgcccggcgt
gcctgcgccggccgccggtacacgctcggccgcaacttccgctcgacggcgccgatggtg
gcggcggtcaaccgctgcttcggtttcgccgaggcgcgctccgccggggctggtgccttc
ctgttccgtcccccgggcgcaagcccggacgacaacccgctgcccttcattcccgccgca
gcgcaggggcggaaggagacgctggagatcgacggccggccggtcgcggcgctcaccgca
tggtggctggcggcgcgggaggacggcaagagcctgcccaagggtgcctaccgcgaacag
atggccgccgcctgtgccagcgcgatggtgcgcctgttgaaccgcggccgcgcgggagcg
gcgggtttcgtcgccgggaccgggttcgctgcgctgcgcccgcgcgacctcgccgtgctg
gtccatacccgggacgaggccgatgcgatccgcgccgcgcttgccgtgcgcggcgtgcgc
agcgtgtacctgtccgatcgcgactcggtgttcgacagcgcccgcgccgaggaactgcag
cactggctcgcggcgtgcgccgagcccgacgacgcgcgcctgctgcgcgctgcgctggcg
accgcgaccctggggctggactgggccgcgctcgatggcctggaccgcgacgagcgcgcg
tgggaggcccgcgtgctgcagtttcgcggctatcgcgagctgtggcgccgccagggagtg
ttgccgatgctgcgccggctgctgcacgacttcgacgtccccgcgcgcctgctcggcgcc
gccgcggtgaacggcggcgagcgggcgctgaccgacctcctgcacctcgccgaactgctc
cagcaggcttctgccgtgctcgacggcgagcatgccctgatccgccatctggcccgccag
cgccagcccggcgcgcgcaccgggagcggcgacgaggggcgccagatccgcctcgaaagc
gacgccgacctggtccaggttgtcaccgtgcataagtcgaaaggcctcgaatatcccctc
gtctttctgccgttcgcctgctcctggcgccgggtcggggccgccgaccgcccgctcacc
gtgcatgacgccggcggccgggcgcagctgctgctgtgcgccgacgaggacacgctcgcc
cgcgccgaccgcgagcgcctgggcgaggatctgcgcaagctctacgtcgccctcacccgc
gcccgccatgcgacctgggttgggctggcgccgctcgacgagctcgagcacagcgccttc
ggctacctcctcgcggggggcgcgccgatcgctcccgccgccctcgaagcccacttgcgg
gcgctcaagggcgaggccgactgcatcgcggtggcgccggcccccgagcccaccgccgag
cgctacgcggcgcccggcgccgatgccgtgcccggcccggcgcgccggccgcggcgcagc
gtgcgcgagcactggtggatcgcgagctattcggcgctgaaaaccggcgggcacggcgac
ggcctcccgcccgccgttgcggatacagtcgccgatgcgatcgccgatgcggttgccgag
gccgaggcgcgcggggtgcgtccgcccgcggcgccggacagcgccgccgaagccactttc
cacgaaaccctgcacgccacgccgctcctcgccgcgccgccgcacagcgtgccggcgcag
ggcgccggcctgcacgccttcccgcgcggcgccgaggccggtacctttctccacgagctg
ctcgaatgggccgccgagcgcggtttcgcgtccctggcggctgaccccggtgggctgcgt
gacacggtcgcgcgccgctgccggatgcgcggctgggaggcctggatcgggccattgacg
gcgtggctggagcacttcctcgccgccgaactggcgctgccggccgcgcccgggcgggcg
gcgacccgcttgcgcctggccggcctcggcgccgtggtggcggagatggagttctggctt
accgtcgatacgctcgatacccgcgtcctcgaccgcctcgtgtgcgcccacacgctggac
gccgcggcccgcccggcactgctccccgacaccctcggcggcatgctcaagggcttcatc
gacctgctgttcgagcacgaggggcgcttctacgtcgccgactacaagtcgaactggctg
ggggccgatgacggcgcctacaccgccgcggcgatgcgggcggcggtcctcgcccagcgc
tacgagctccaatacaccctctatctgctggcgctgcaccgcctgctgcaggcgcggctg
cccggatacgactacgaccgccacgtcggcggcgcgctctacctgttcctgcgcggcagc
cgtgcgcccggcgccggcgtgcacttcgagcgcccgccgaaggccttgatcgagaccctc
gaccggctcttcgccggcaccggcgcggtgggcggagggggggcggtggctgcccggctt
gcggaggggagcgaatga
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