Thauera chlorobenzoica: Tchl_2181
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Entry
Tchl_2181 CDS
T04612
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tcl
Thauera chlorobenzoica
Pathway
tcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tchl_2181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcl03019
]
Tchl_2181
03009 Ribosome biogenesis [BR:
tcl03009
]
Tchl_2181
Enzymes [BR:
tcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tchl_2181
Messenger RNA biogenesis [BR:
tcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tchl_2181
Ribosome biogenesis [BR:
tcl03009
]
Prokaryotic type
rRNA helicases
Tchl_2181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
APR05024
UniProt:
A0A1L6FDM6
LinkDB
All DBs
Position
complement(2362612..2364495)
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AA seq
627 aa
AA seq
DB search
MRFADLELPAPLLSALTEVGYETPSPIQAACIPLLLAGRDILGEAQTGTGKTAAFALPML
ARLDLADNRPQVLVLTPTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQLSRG
AQIIVGTPGRVMDHLERGSLQLDSLRALVLDEADEMLRMGFIEDVEWILEHTPAERQTAL
FSATMPNVIREVARRHLHEPEEIKIRSATATVAKISQRYWLVRGVDKLDALTRILDAEES
FDAALVFVRTKIATEELADKLSARGYAAAALNGDMTQGLRERVIEQLKNGALDIVIATDV
AARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGAAILFVAPRETRMLKMIERAT
RQPITPIALPSSEEVTNLRVAQFKRQVVDTLGGGELGFFMNVVNELIDENELDVHEVAAA
LALLAQRDRPLQIEESGRGWEIATTPSAEGGRPPRAEHFTTGAARERAQRPNRDEILARR
RAFSDGALARYRIEVGRNQGASPKEIVGAIANEGGIEGKFIGQIHLFDDFSTVELPARLP
EDLLATLKRTRVRQMPLNIRALSDAEAASMPERRPRPRDATPAGGEGRPRGKGGFEPRDA
APGGAHTGNKPRAPGTPRSSPKPPRRG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
ttgcgctttgccgacctcgaactgcccgcccccctgctctccgcgctgaccgaagtcggc
tacgaaacaccctccccgatccaggctgcatgcattccactgctgctcgccggccgcgac
atcctcggcgaagcccagaccggcaccggcaaaaccgccgccttcgccctgccgatgctg
gcccggctcgatctcgccgacaaccggccgcaggtgctggtgctcactcccacccgcgag
ttggcgatccaggtcgccgaggccttcgccaagtacgcccatcacctgaagaacttccac
gtcctgccgatctacggcggccagagcatggtcgtgcaactgcgccagctgtcgcgcggc
gcccagatcatcgtcggcaccccgggacgggtcatggaccacctcgaacgcggcagcctt
cagctcgacagcctgcgcgcactcgtcctcgacgaagccgacgagatgctgcgcatgggc
ttcatcgaggatgtcgaatggatcctcgagcacaccccggccgaacgccagaccgcactg
ttctcggcaacgatgccgaacgtgatccgcgaagtcgcccgccgccacctgcacgaaccg
gaagaaatcaagatccgctccgccaccgccacggtggccaagatcagccagcgctactgg
ctggtgcgcggcgtggacaagctcgacgccctcacccgcatcctcgatgccgaagagagc
ttcgacgccgcgcttgtcttcgtgcgcaccaagatcgccaccgaagagctcgccgacaag
ctcagcgcccgcggctacgccgccgccgcgctcaacggcgacatgacccagggtctgcgt
gagcgcgtgatcgagcaactgaagaacggggcgctggacatcgtcatcgccaccgacgtc
gccgcgcgcggcatcgacgtgccgcgcgtgtcccacgtcatcaactacgacatcccctac
gataccgaagcctacgtgcaccgcatcggccgtaccggccgcgccggccgcgaaggcgcg
gcgatcctgttcgtcgccccgcgcgagacgcgcatgctgaagatgatcgagcgcgccacc
cgccagccgatcaccccgatcgcgctgcccagcagcgaggaagtcaccaacctgcgcgtc
gcccagttcaagcgccaggtggtcgacaccctgggcggcggcgagctgggatttttcatg
aacgtggtcaacgagctcatcgacgagaacgaactcgacgtccacgaagtggccgccgcc
ctcgccctgctggcgcaacgcgaccgccccctgcagatcgaggaatccggccgcggctgg
gagatcgccaccaccccctccgcagaaggcggccggccaccgcgcgccgaacatttcacc
accggcgccgcgcgcgagcgcgcacagcgccccaaccgcgacgaaatcctcgcccgccgc
cgcgccttcagcgacggcgccctggcgcgctaccgcatcgaggtcggccgcaaccagggc
gcgagcccgaaggagatcgtcggcgccatcgccaacgaaggcggcatcgagggcaagttc
atcggccagatccacctgttcgacgatttctccacggtcgaactgcccgcccgcctgccc
gaagacctgctcgctaccctgaagcgcacccgcgtccgccagatgcctctcaacatccgc
gcgctgagcgatgccgaagcagcctccatgcccgagcgccggccgcggccgcgcgacgcc
acgccggccggcggcgaaggccgtccacgcgggaaaggcggtttcgagccccgcgacgcg
gcacctggcggagcgcacaccggcaacaaaccccgggccccgggcacgccccggagttcc
cccaagcctccccgccgcggctaa
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