Thauera chlorobenzoica: Tchl_2380
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Entry
Tchl_2380 CDS
T04612
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tcl
Thauera chlorobenzoica
Pathway
tcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tchl_2380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcl03019
]
Tchl_2380
03009 Ribosome biogenesis [BR:
tcl03009
]
Tchl_2380
Enzymes [BR:
tcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tchl_2380
Messenger RNA biogenesis [BR:
tcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tchl_2380
Ribosome biogenesis [BR:
tcl03009
]
Prokaryotic type
rRNA processing factors
Tchl_2380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
APR05218
UniProt:
A0A1H5RQZ1
LinkDB
All DBs
Position
complement(2580510..2583551)
Genome browser
AA seq
1013 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDY
GAERHGFLPFKEISRTYFQPGVDAGKASIKEALREGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERAELREAMDQLEVPSGMSLIARTAAIGRSAEELQ
WDLNYLLQLWTAIEGAAQGQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFDQAC
QFMAHVMPANVSRVKRYSDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSV
DVNSGRATKGADIEETALRTNLEAADELARQLRLRDLGGLIVIDFIDMESAKNQREVESR
LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCNGTGHIRSTESSALH
IVRILEEEAMKENTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPA
HEIIRLRHDQLNAEDIALASYQMVQKPDEEQQRLPSKANERPPRQEAAVKGIAPAQPAPI
AAAAPADAPPAAAPQPPSKGLFARIIGLFTGKKAEAPPPSALTTATEAAPKREGRGRSER
SGEGRRGNGSRGRRNERDGDPQGGRSPRTERGENTERPQRNAAPAERPERSERAERTEKA
ERAEGGRRGRGQRVNRDEEAVERNERTTELRSAIVDEDRLTAGTAGVLAAAATAETLAPE
AAASETPAAEIATEEGAPTEKRRRRGRGRGRRSGEAQASAAVSGEDSAEAQGEDSAPVPA
PTPDSEADDALASIPPSAPSEERVGSNAAPVAEATLTPQPLEHSTAADTPAQAEPELPVA
VSAAVSIEPAPQTPAEAPPAPVRIVAPVPPAPDAAASPAAEAPFASEPGIEVAATAPAPA
IAAAAIVEHAEPAAPSGSTAIEAEPVPETAAEAPIEAPLPADEAEPAAGRPELAPNAPAP
VADDNGLIKIETDPSKIVQFGSGAVEPPVRLGRKPRTAPVVVDEPLQQVETHK
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaacgcgacgcaggccgaagaactacgcgtcgcaatcgtggac
ggtcagaaactgatcgatctcgatatcgaatcggccgcaaaagaagaacgcaagagcaac
atctacaaggcggtcatcacccgcatcgagcccagcctcgaagcggccttcgtcgactac
ggcgccgagcgccacggcttcctgccgttcaaggaaatctcgcgcacctacttccagccc
ggcgtcgatgccggcaaggcctcgatcaaggaagccctcagagaaggccaggaactcatc
gtccaggtggaaaaggacgagcgcggcaacaagggcgcggcgctcaccacctacatctcg
ctcgccggccgctatctggtgctgatgcccaacaacccgcgcggcggcggcgtctcgcgc
cgcgtcgagggcgacgagcgcgccgaactgcgcgaggcgatggaccagctcgaagtcccc
tcggggatgagcctgatcgcgcgcaccgcggcgatcggccgctccgccgaagagctgcag
tgggacctcaactacctgctgcagctgtggaccgcgatcgaaggcgcggcgcagggccag
tccggcgcgttcctgatctaccaggaaggcagcctggtgatccgcgcgatccgcgactac
ttccagcccgacatcggcgagatcctgatcgacaccgacgacatcttcgaccaggcgtgc
cagttcatggcccacgtcatgcctgcgaacgtctcccgggtgaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgagcaccagatcgaatcggcctattcgcgccag
gtgaacctgccctcgggcggcgcggtcgtgatcgaccataccgaggcgctggtgtcggtc
gacgtcaactcgggccgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacc
aacctcgaagccgccgacgagcttgcccgccagctgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggagtcggcgaagaaccagcgcgaagtcgaaagccgc
ctgcgcgacgccctgcgccacgaccgcgcacgggtacagaccggcaagatcagccgcttc
ggcctgctcgagctctcccgccagcgcctgcgtccggcgctcgccgaaaccagctacatc
acctgcccgcgctgcaacggcaccggccatatccgcagcaccgaatcgtcggcgctgcac
atcgtgcgcatcctcgaagaggaagcgatgaaggagaacaccggcgcggtgcacctgcag
gtgccggtcgacgtcgcaaccttcctcctcaacgagaagcgcgtcgatatcgcccgcatc
gagatgcgccacaaggtgcagctgatcatcgtcccgaaccgccatctggagacgccggcg
cacgagatcatccgcctgcgccacgaccagctcaacgccgaagacatcgccctggccagc
taccagatggtgcagaagccggacgaagagcagcagcgcctgccgtcgaaggccaacgag
cgcccgccgcgccaggaagccgcggtcaagggcatcgccccggcccagccggcaccgatc
gcagccgccgcgccggccgatgcgcctcccgcggcggcgccccagcctccgtcgaagggc
ttgttcgcccgcatcatcggcctgttcaccggcaagaaggccgaagcgccgccgccgtcg
gcactcaccactgcgactgaagccgcgccgaagcgggagggccgcggccgcagcgagcgc
agtggcgaaggccgccgtggcaacggcagccgtggccgccgcaacgagcgtgacggcgac
ccccagggcggacgcagcccccgcaccgagcgcggcgaaaacaccgagcgcccgcaacgc
aacgcggctcctgcagagcggcccgagcgcagcgagcgcgccgaacgcacggaaaaggct
gagcgcgccgaaggcggtcgccgcggccgcggtcagcgcgtcaaccgcgacgaagaagcg
gtcgagcgcaacgaaaggacgaccgagcttcgcagcgcgatcgtcgacgaggaccggctg
acagcaggcaccgcaggcgtccttgcggccgcggccactgccgagacgctcgccccggaa
gccgcagccagcgaaacgccagccgccgaaatcgccactgaagaaggcgccccgaccgag
aagcgccgccgtcgcggtcgtggtcgcggccgccgttccggtgaagcgcaagccagcgcg
gcggtctccggcgaggacagcgccgaagcccagggcgaagatagcgcgcccgtgccagct
cccaccccggactccgaggcggacgatgcgcttgcgtccattcccccctcggctccgagc
gaggagcgcgtcggcagcaacgcggcaccagttgccgaagcaacgctgactccccagccg
ctcgagcacagcacggcggcggatacgcccgcgcaagccgaaccggaactcccggtcgcc
gtgtccgccgcagtgagcatcgagcctgcaccgcaaacgccggccgaagcaccgccggcc
ccggtccgcatcgttgccccggtgccccccgcgccggatgcagccgccagcccggcggcc
gaggcaccgtttgcgtccgagccgggcatcgaggtcgcagcgaccgcaccggcgccggcc
atcgccgcagcggcaatcgtcgaacacgccgaaccggccgcgcccagcggcagcaccgca
atcgaagccgagcccgtaccggagaccgctgccgaagcgccgatcgaagcgcccttgccg
gccgatgaagccgagccggcggcaggccgacccgagctcgccccgaacgcgccggccccg
gttgcggacgacaacggactgatcaagatcgaaaccgatccgtccaagatcgtacagttc
ggcagcggcgcggtcgaacctccggtgcgtcttggccgcaaaccgcgcacggctccggtc
gtcgtcgatgagccgctgcagcaggtggaaacccacaagtaa
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