Thauera chlorobenzoica: Tchl_2652
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Entry
Tchl_2652 CDS
T04612
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tcl
Thauera chlorobenzoica
Pathway
tcl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tchl_2652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcl03400
]
Tchl_2652
Enzymes [BR:
tcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tchl_2652
DNA repair and recombination proteins [BR:
tcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tchl_2652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AAA_30
AAA_16
ERCC3_RAD25_C
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
APR05478
UniProt:
A0A1H5YRR7
LinkDB
All DBs
Position
complement(2870535..2874065)
Genome browser
AA seq
1176 aa
AA seq
DB search
MPSPLDALLVHLATLPLPKPGACLELPPLAGSADALAIAQLAARGRMLLVVTANPLDAQR
LVDEIAWVAPALRLHLLPDWETLPYDSFSPHQDLISERLATLYALSRGEADVVLVPASTA
LYRMAPPSYLAAYTFFLKQGERLDGEQFKAQMALAGYAHVTQVVSPGEFSVRGGLVDLFP
MGSPLPFRIDLFDDEVESIRTFDPDTQRTVYPTKEIRLLPAREFPLDEAGRTRFRSRFRE
TFEGDPTRAAVYKDISNGIAPAGIEYYLPLFFDDTATLLDYLPADTPVLLHRDVPAAIAE
FWRDTRSRHDLLKGDRSRPVLPPEQLFLSDEAFFIALKRRPRLDIGAERDTRHGAGAGGG
TAAGEAAGTVDSADRDAAALALPAPEVAVERKSSDPLHRLKAFIDSFIDEAGGRILLLAD
SPGRRETMAEFFAEYGVKPEPTTDFAAFLNTGSPVALGIAPLARGFVLPAARLAVLTEAE
LYAATARSRSRRDSRKAATMEGWLRDLSELKLGDPVVHVSHGIGRYLGLIHMNLGEGDTE
FLHLEYNGGDKLYVPVAQLHVITRYAGADPEGVDLHRLGSGQWEKAKKKAALQVRDTAAE
LLALYAQRAARPGHRFDFRQHDLEAFTEGFGFETTPDQQAAIDAVVTDMKSGRPMDRLVC
GDVGFGKTEVALRAAFIAVADGKQVVVLCPTTLLAEQHYQTFADRFADWPIKLAELSRFK
SAKEQAEALQLLGEGKVDIIIGTHRLLQKDVVFKRLGLVIIDEEHRFGVRQKEALKALRS
EVDILTLTATPIPRTLGLAMEGLREFSVIATAPQKRLAIKTFVQRASRGIIREAVLREFK
RGGQVYFLYNEVDTIDNMRNELEELLPEARIVVGHGQLPERELERVMRDFTQQRANLLLC
STIIETGINIPTANTIIIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPTAQAQ
KRLEAIAMMDELGSGFYLAMHDLEIRGAGEVLGENQSGEIQQVGFSLYTEMLKRAVKDLQ
AGKEPDLSQPLEVVSEINLHTPALLPTDYCPDVQERLTLYKRLANCDTEDELRDLQEELI
DRFGELPPQTLALIETHRLRMLVKAFGVHKLDASEAQISVQFAKDAPIDPVKVIFLVQKD
RNTRMAGPEKLIRRAGLPDLKERVKAVRELLEAVRT
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgccaagcccgctcgacgccctcctcgtccacctcgccaccctgcccctgcccaagccc
ggcgcctgcctcgagctaccgccgctggccggctctgccgacgcgttggcgatcgcccag
ctcgccgcccgcgggcggatgctgctggtggtcaccgccaacccgctcgatgcccagcgc
ctggtggatgaaatcgcctgggtcgcaccggccttgcgcctgcacctgctgccggactgg
gaaaccctgccctacgacagcttctccccgcaccaggacctgatctccgagcgcctggcg
acgctgtacgcgctgagccgcggcgaagccgatgtcgtgctggtaccggcctcgaccgcg
ctctaccggatggcgccgccgagctatctcgccgcctacaccttcttcctcaagcagggc
gagcggctggatggcgagcagttcaaggcgcagatggcactcgctggctacgcccacgtc
acccaggtggtcagccccggcgaattctcggtgcgcggcggcctcgtcgacctgttcccg
atgggctcgccactgcctttccgcatcgacctgttcgacgacgaagtcgagagcatcagg
actttcgaccccgatacccagcgcaccgtctacccgacgaaggaaatccgcctgctgccg
gcgcgcgaattccccctcgacgaagccgggcgcacccgctttcgcagccgcttccgcgag
accttcgaaggcgacccgacacgcgcggcggtctacaaggacatttccaacggcatcgcc
cccgccggcatcgagtactacctgccgctgttcttcgacgataccgcgaccctgctcgac
tacctgcccgccgacaccccggtattgctgcaccgcgacgtccccgcggcgattgccgag
ttctggcgcgacacccgctcgcgccacgacctgctcaaaggcgaccgcagccgcccggtg
ctgccgcccgaacagctgtttctcagcgacgaagccttcttcatcgcgctcaagcgccgc
ccgcgcctcgacatcggcgccgagcgcgacacccggcacggcgccggagcgggcggcggc
accgccgcgggcgaagcggcgggcacggtggacagcgccgatcgcgatgccgccgcgctc
gccctgcccgcccccgaggtcgccgtcgagcgcaagtcctccgacccgctgcaccggctc
aaggccttcatcgatagcttcatcgacgaggccggcggccgcatcctgctcctcgccgac
tcgcccggccggcgcgaaacgatggccgagttctttgccgaatacggcgtgaagcccgag
ccgacgaccgacttcgcggcctttctcaacaccggcagcccggtggcgctgggcatcgct
ccgctcgcgcgcggcttcgtgctgccggcggccaggctggcggtgctgaccgaggccgaa
ctctacgccgccaccgcccgcagccgcagtcgccgcgacagccgcaaggcggcgaccatg
gaaggctggctgcgcgacctctccgagctcaagctcggcgacccggtggtacatgtgtcg
cacggcatcggccgttacctcggcctcatccacatgaacctcggcgagggcgacaccgag
ttcctccacctggaatacaacggcggcgacaagctctacgtgccggtggcgcagctgcac
gtgatcacccgctacgccggtgccgacccggaaggcgtggacttgcaccggctcggctcc
gggcaatgggagaaggcgaagaagaaggcagcgctgcaggtgcgcgacaccgccgccgag
ctgctcgcgctctacgcccagcgcgcggcgcgcccggggcaccgcttcgacttccgccag
cacgacctcgaggctttcaccgaaggcttcggcttcgagaccaccccggaccagcaggcc
gcaatcgacgctgtcgtcaccgacatgaagtcggggcggccgatggaccgcctggtgtgc
ggcgacgtcggcttcggcaagaccgaagtggcgctgcgtgcggccttcatcgcggtggcc
gacggcaagcaggtggtggtgctgtgcccgaccaccctgctcgccgagcagcactaccag
accttcgccgaccgcttcgccgactggccgatcaagctcgccgaactgtcgcgcttcaag
tccgccaaggagcaggccgaggcgctgcagctgctcggcgaaggcaaggtcgacatcatc
atcggcacccaccgcctgctgcagaaggacgtggtgttcaagcgcctcgggctggtcatc
atcgacgaggagcatcgcttcggcgtgcgccagaaggaggcactgaaggcgctcaggagc
gaggtcgacatcctgaccctgaccgccaccccgatcccgcgcacgctcggcctggcgatg
gaaggcctgcgcgaattctcggtgatcgccaccgcgccgcaaaagcgcctggcgatcaag
accttcgtccagcgcgccagccgcggcatcatccgcgaggcggtgctgcgcgaattcaag
cgcggcggccaggtgtactttctgtacaacgaggtcgacaccatcgacaacatgcgcaat
gagctcgaggagctgctgcccgaggcgcgcatcgtcgtcggccatggccagctgcccgag
cgcgagctcgagcgcgtgatgcgcgacttcacccagcagcgcgccaacctgctgctgtgc
tcgacgatcatcgagaccggcatcaacatccccaccgccaacaccatcatcatccaccgc
gccgaccgcttcggcctcgcccagctccaccagctgcgcggccgggtcggacgcagccac
caccaggcctacgcctacctgctcaccgacgcccacgccaagcccacggcgcaggcgcag
aagcgcctcgaagcgatcgcaatgatggacgagctcggctccggcttctacctcgcgatg
cacgacctcgagatccgcggcgcgggcgaggtgctgggcgaaaaccagtccggcgaaatc
cagcaggtcggcttcagcctgtacaccgagatgctcaagcgcgcggtgaaggacctgcag
gcgggcaaggagcccgacctgagccagccactcgaggtggtgtcggagatcaacctccac
accccggcgctgctgcccaccgactactgccccgacgtgcaggagcgcctgacgctgtac
aagcgcctggccaactgcgacaccgaggacgagctgcgcgatttgcaggaggaattgatc
gatcgtttcggcgagctgccgccgcagaccctggcgctgatcgagacccaccgcctgcgc
atgctggtgaaggccttcggcgtgcacaagctcgacgcctcggaggcgcagatcagcgtg
cagttcgccaaggacgccccgatcgacccggtgaaggtgatctttctggtccagaaggac
cgcaacaccaggatggcgggcccggaaaaacttatccgccgcgccggcctgcccgatctg
aaagagcgggtgaaggcggtgcgcgaattgctcgaagcggtccggacttga
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