Thermodesulfobacterium commune: HL41_01520
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Entry
HL41_01520 CDS
T03212
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tcm
Thermodesulfobacterium commune
Pathway
tcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HL41_01520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcm03019
]
HL41_01520
Messenger RNA biogenesis [BR:
tcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HL41_01520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
HHH_5
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AIH03607
UniProt:
A0A075WYE0
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All DBs
Position
275974..277578
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AA seq
534 aa
AA seq
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MGLVLGLILGSLLGIAILWVYLYFQKKKNLLVQKTAEEIIKEAEKKAKEVLEKAEREANF
RLQQAELKVKEQILSHKQKLEEEFNKRLQEVILKEERITSKEEYLSKKESDLFKREEQLL
KREEGLEKKLREIEEFKKSLEEQKHEIERLYHQAREELEKIAGLSEKEAKEILLKRVEEE
LIEEKAKLIMKIENEIKEEVKRKTQELLSYSVAKAAIPFVTEKTVSTVQLPNEEMKGRII
GREGRNIRTFETLTGVDLLIDDTPEVVVLSCVDPLRREIARIALERLIADGRIHPTRIEE
VVRQVEEEMEQHLVEVGEKACFELGIYGLHPELVKMLGKLKYRTSYSQNVLQHSIETAII
CGALAGELGIDVKKAKRAALLHDIGKAASYELEGPHALIGAEIARKYGEDEEIVNAIASH
HEDVPINSLLGIILQIADAISGARPGARRELLEAYIKRIKELESIAYSFEGVEKAFAIQA
GREIRVIVDDKKITDEQAYVLAREIAQKIEKEVTYPGIIRVTVIRETRVIEYAK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgggtcttgttttaggcttgattttaggtagtttattgggaatagccatattatgggtc
tatttatacttccagaagaaaaagaaccttttggttcaaaaaactgctgaagaaatcatc
aaagaggcagaaaaaaaagctaaagaagttttagagaaggcagaaagagaggctaatttt
aggcttcaacaggcggaactcaaagttaaagaacagattttgtctcataaacaaaaatta
gaagaagagtttaataaaagacttcaagaagtaatcttaaaagaagaaagaattaccagt
aaagaagaatacctttctaaaaaagaaagcgatctttttaagagagaagaacagttatta
aaaagagaagaaggtttagaaaaaaaactaagagagatagaagaatttaaaaaatcttta
gaagaacaaaaacatgaaatagaaagattatatcatcaggcaagggaagaacttgaaaaa
atagccggactttctgaaaaagaggctaaagaaatacttcttaaaagagttgaggaagaa
ttgatagaagaaaaggcaaaactaataatgaagatagaaaatgaaataaaagaagaggtt
aaaagaaaaacccaagaacttctttcttattcagtggctaaagcagccataccttttgta
accgaaaaaactgtttctacggttcaacttccgaacgaagagatgaaaggtagaattata
ggaagagaaggaagaaacataagaacctttgaaaccttaacaggagttgaccttttgata
gatgatacccctgaggtggtagttctttcttgtgtagacccccttagaagagaaatagct
cgtatagccttagaaaggcttatagcagacggaaggattcatcctacaagaatagaagaa
gtggttagacaggtagaagaagaaatggagcaacatctagtggaggtaggagaaaaggcg
tgttttgaattggggatttatggtcttcatccagaattagtaaaaatgcttggaaagctt
aaatataggacaagctatagtcaaaacgtgcttcaacattctatagaaacagctattatt
tgtggagctttagcaggagaactgggtatagatgtaaaaaaagctaaaagagctgcttta
ctgcatgacataggtaaggcggcatcttatgagttagaaggtcctcatgctttaataggg
gctgaaattgcgagaaaatatggagaagatgaggaaatcgtaaatgctattgcttctcat
catgaagatgtccctataaatagtcttttagggatcattttgcagatagctgatgctatt
tcaggggcaaggcctggtgcaagaagagagcttcttgaggcttatattaaaagaataaaa
gagttagaatctattgcttactcttttgaaggagtagaaaaagcttttgctattcaggca
ggaagagaaattagggttatagtagatgataaaaagattacagacgaacaagcttatgta
ttagctcgagaaattgcacaaaaaatcgaaaaagaagtaacctatccagggattattaga
gtaacagtgataagagaaaccagagtaatagaatacgcaaaataa
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