Thermodesulfobacterium commune: HL41_05035
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Entry
HL41_05035 CDS
T03212
Name
(GenBank) hypothetical protein
KO
K03701
excinuclease ABC subunit A
Organism
tcm
Thermodesulfobacterium commune
Pathway
tcm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HL41_05035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcm03400
]
HL41_05035
DNA repair and recombination proteins [BR:
tcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HL41_05035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HL41_05035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
UvrA_inter
AAA_21
AAA_29
AAA_16
AAA_23
nSTAND1
AAA_15
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_22
AAA_33
nSTAND3
NACHT
Viral_helicase1
AAA_18
AAA_25
SLFN-g3_helicase
UvrA_DNA-bind
DUF4350
DZR
Motif
Other DBs
NCBI-ProteinID:
AIH04174
UniProt:
A0A075WSD4
LinkDB
All DBs
Position
967063..972291
Genome browser
AA seq
1742 aa
AA seq
DB search
MEILEVTQNNLKGFSLKLPFYHLIAVTGVSGAGKSSLVFDTLFAEGQRRYIETFSSYVRQ
FFEKLPRPKVKAILNIPPALAFPQGNSIKTSRSTVATLTEISHFTKMLYYYNGVPFCPNC
KKYLLPQTPQSIAKEIIEKFYQVPLYLIVPQKPQESFEHLKEGLLAAGFSRVFLDGKVCE
IDEIEKVPEEIELVIHRLKPTEKDLFDLISSLELGFKLSPWIKVRTIYGEEAYYTQEKNC
PQCGLKIPEKTPNLFSFNSSLGACPECKGFGNLLVLDFEALVKHPEKPATKGAIPILDFP
FLFEVKLDLIEFLRTKNINLNLPFKDLPEEIKQKIFWGEGDWYGLKELIDWLESKRYKPH
IRILLSKLRREVSCPVCKGTRFNPQALMFYVNGLNIGDFYSLEIKEAVKFIQNFLEQKPQ
PAEERLAKEILKRLSYLEEVGLSYLTLNRASKTLSGGETSRCLLTRALSSNLVETLYLID
EPTTGLHPRDTQKVLKLLERLVSQKNTVVVVEHDPEIITQADLLIDLGPEGGEKGGHLLF
FGPPKNIFNTNTPTAEALTEISQKRTYSLTHFQPSGFIRFYGAKKNNLKGFSFSLPLKAI
TCIVGVSGSGKSTLLEDIIYQGLVDAKNKHPLKTCEKIEGVNRIDQVLYLTQEPLARSPR
SVVATYLDIMVYLRKLLASTNTAKSLGYTETWFSFNSEHAQCPACKGLGFEIIEMQFLSD
LTIPCEVCKGTRFREEILEVRWRGKNIAEMLDLTVEQALEFFSGHTPLKKTLTLLKNLGI
GYLKLGQPLSTLSGGEAQRLKIAELLSKIKGEKCLILLDEPTVGLHLKDIEKLISSLNYL
KSLGHTVVIVEHHPEVILNSDWILELGPGGGEEGGELLFQGPFSEFIKNPEVQTQTSVYL
TEYLDGLNLKDKAEAPKNYRYDEDLIKLRGIRHHNLKNIDLNLPRKQLIVITGVSGSGKS
TLAFDVVFAEGQRRFLETLPTYLKQFFKLYEEIDYDLISGIPPTVALEQRSGELSPKSTV
GTITEILPYLRLLYSKVSKAYCPKCERELKPHEPKELFDLALEFLKKEKASNITLLAPLV
KHRKGIYKNLFDKLLANLYHKVRINGEFYHIPPIPALSRFKEYTIEVVLAQEIDWQEEWF
EKIFYKGLELGKGEVLIKTDKREVLFSQKRTCSLCGISLPEPDPLLFAFNSKVGACPNCG
GLGRLEEKPCPDCNGSRYRKEVFSYKINGISLPELSNLSLYEVKKFLEGLKFEGIQQKIA
EELISETLSRLNYLIDLGVGYLTLGRSADTLSSGEAKRVRISAEIGSNLTGVAYILDEPT
IGLHPKDTQKLIEVLKKLRDKGNTLIVVEHDEDTILASDFIVDLGPGGGKRGGQVLFSGP
SKEFLRSSSPTAEVIKDPNRKTLKSFKRNPKEFLVLKEASLRNLKNINVSFPLNALTVVV
GVSGSGKSTLLEECLYENLKRLLEGEKNVIYGLKNIENWEKIKRVYLVDHQPIGNTPKST
PATYVGVFTDIRKAFANTLLAKQRGYKEGRFSFNTKEGQCPYCNGQGYEKIEIKFLPAVY
QKCEYCGGKRYNPETLEILLKNKNIAEVLEMDFAEAVEFFSNYPSIQHKLKILCDIGLDY
LTLGQPSPTLSGGEAQRIKLAKEFIKSSQPGNLYLLDEPTTGLHIKDVEKLAELLQGLIQ
KGHTVIVIEHNLELIKWADWVVELGPEGGEKGGEILFQGPIEDFLKASTPTSKILKKYLK
LT
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atcgaaattcttgaggttacacagaataacctcaagggatttagtttaaaacttcctttt
tatcatctgatagcagttaccggtgtttctggggctggaaaatcgagtttagtttttgac
accctttttgccgaaggccagagacgttatatagaaaccttttcttcgtatgtaagacag
tttttcgaaaaactccccagacctaaggttaaagctatcttaaacatccccccagcttta
gcctttcctcaaggaaatagcatcaaaacttcacgttctacggtagctacccttactgaa
attagccattttaccaagatgctttattattacaacggggtccctttttgtcctaactgt
aaaaaataccttctacctcaaaccccacagtctatagccaaagagattatcgaaaaattt
tatcaggtaccactctacctcatagttcctcaaaaaccgcaagaaagctttgagcacctc
aaagaaggtctacttgctgcaggattttcaagggtctttttagatgggaaggtatgtgaa
atagacgagatagaaaaagtccctgaagaaatagaattagtcatacatagacttaagcct
acggaaaaagacctctttgatcttatatcctctttagaactcggttttaaactttctccc
tggatcaaagttagaactatttatggagaagaggcatattatacccaagaaaaaaactgt
cctcagtgtggacttaaaatacccgaaaaaacccccaatttattctcgtttaacagctcg
ttaggggcttgccctgaatgcaaagggtttggaaacctgttagtcttagactttgaggcc
ttggtaaaacatccagaaaaacctgcaaccaaaggcgctatccctatccttgattttcct
tttttgtttgaggtaaaactggacctgatagagtttttaaggactaaaaacataaactta
aaccttccctttaaagacctccctgaagaaattaagcaaaaaatcttttggggcgaaggg
gattggtacggactgaaagagcttatagactggcttgaaagtaaacgttataaaccccat
ataaggatccttctttcaaaactaagaagagaagtaagctgtcctgtatgtaaaggaacc
aggtttaaccctcaagccttgatgttttatgtcaacgggttaaacatcggagatttttac
agtttagaaattaaagaagcggttaagtttattcaaaactttttagaacaaaaacctcag
cctgcggaagagaggctggctaaagaaatattaaaacgtctctcctatcttgaagaagta
gggctttcctaccttacccttaaccgagcaagcaaaaccctttctggtggagaaaccagc
agatgtcttctaacaagagctctttcctctaacttagtagaaaccctttacttgatagat
gagccaactactggacttcatcccagagatacccaaaaagtgttaaaacttcttgaaaga
ttggtttctcaaaaaaacactgtggtggtagtagaacacgatccagagatcattactcaa
gcggaccttttgatagacttaggtccagagggaggggaaaaaggaggtcatctattattt
tttggacctccaaaaaatatttttaacacaaatactcctacagctgaagctttaaccgag
ataagccaaaaaagaacctattctttaacccactttcaaccctcaggttttatcagattt
tatggagctaagaaaaacaacctaaaaggattctctttttctcttccgctaaaagcgatt
acctgcatagtaggggtatcagggtctggtaagtctacccttttagaagatataatttat
caaggcctggtcgacgcaaagaataaacatcctttaaaaacctgtgaaaagatcgaggga
gtcaaccggatcgaccaggtgttataccttactcaggaaccactggctcggtcccctcgc
tcggtagtagcaacctatttagacatcatggtatatttaaggaagcttcttgcaagtact
aataccgcaaaaagtttgggatatactgaaacttggttttcttttaactcagaacatgcc
cagtgtcctgcatgcaaaggtcttggttttgagataatagagatgcaatttttatcagac
ctaaccatcccctgtgaggtttgtaaggggacccgatttagggaagagattttagaagtc
agatggagagggaaaaacatcgctgaaatgttagaccttaccgtagaacaggctttagag
ttcttctcaggacatacacctctcaaaaaaaccctcaccctcttaaaaaatcttgggata
ggatatctcaaactggggcaacccctttctactctttcgggaggagaagcccaaagacta
aaaatagcggaattactctcgaaaataaaaggagaaaaatgtctaatccttcttgatgaa
cccacggtgggccttcatctaaaagatatagaaaaactgatttcttctttaaactactta
aaaagcttagggcacacggtggtaatagtagaacatcatcccgaagttatcttaaactct
gattggatactggagcttggtcctgggggcggagaagagggaggagaacttcttttccaa
gggcccttttctgagtttatcaaaaatccagaagtacagactcaaacctctgtttatcta
acagaatatctcgatggcctaaaccttaaagataaagccgaagcccccaaaaactatcgc
tacgacgaagatcttataaaactcagagggattaggcatcataacttaaaaaacatagac
ttaaacctaccaaggaaacagttgatagtaatcaccggggtttctggttctggaaaatct
acccttgcgtttgatgtggtgtttgcggaagggcaaagaagatttttagaaactttaccc
acttatttgaaacagttttttaagctttatgaagagatagattatgatctcatttcaggg
ataccgcctacggtagcgttagaacagcggtcaggagaactttctcccaaatctacggta
gggactattaccgagatccttccttatcttaggcttctttattctaaggttagcaaggcc
tactgtcctaaatgtgaaagggagctaaaacctcatgaaccaaaggagttgtttgactta
gctttagagtttttaaaaaaagaaaaagcttcaaacattacccttcttgctcctttggta
aaacacagaaaaggaatctacaaaaatctgtttgataaactgcttgccaacctatatcat
aaggtcagaataaacggagaattctaccacattcctcctatccctgctctttcaaggttt
aaagaatatacgattgaggtggtgttagctcaagaaatagattggcaagaagagtggttt
gaaaagattttttacaaagggcttgaacttggaaaaggagaggttttgataaaaaccgat
aaaagggaagtactttttagtcaaaaaagaacctgctctttatgtggaataagtcttcct
gaaccagacccgttgctttttgcctttaattcaaaggtaggagcttgtcctaattgtgga
ggacttggtagacttgaagaaaaaccatgccctgattgtaacggttcaagatatcgtaaa
gaggttttttcttataaaattaacggaatttctttgcctgaattgtctaacttaagtctc
tacgaagtaaaaaaatttttagagggacttaagtttgaaggtatacaacaaaaaatagcc
gaagaactaatttctgaaactctctcaagacttaattatttaatagacttaggtgtagga
tatcttaccttaggtaggtctgcagacaccctatcttcaggagaagccaaaagggtaaga
atttcagcagaaataggtagcaatctcacaggggtagcctatatcctcgatgaacctacc
atcgggcttcatcctaaggatacacaaaaattaatagaggtgttaaaaaaactcagggat
aaaggaaataccttgatagtagttgaacatgacgaagatacgattttggcaagcgacttt
atagtagacttgggaccaggaggaggaaaaagaggaggacaggtactttttagcggacct
tctaaagaatttttaagatcttcctcacctacagctgaagtaattaaagatccaaacaga
aaaaccctaaaaagttttaagcgcaatcctaaggaattcttagtacttaaagaggcttct
ctaagaaaccttaaaaatatcaacgtttcttttcccttaaacgctcttacggtagtagta
ggagtttcaggctcagggaagtctactttattagaggaatgcctttacgaaaatctaaaa
agacttttagagggagaaaaaaacgttatttacggtttaaaaaacatagaaaactgggaa
aaaatcaaaagggtatatttagtagaccaccaacctataggaaacaccccaaaatctacc
cctgctacctatgtaggagtttttaccgacatcagaaaggcctttgccaacactttattg
gctaaacaacgaggttacaaagaaggcagattttcctttaataccaaagaagggcagtgt
ccttattgcaatggacagggatatgaaaagatagagattaaatttttacctgcagtttat
caaaaatgtgaatactgtggaggtaaacgatataatccagaaaccttagaaattttgtta
aaaaataaaaacatcgcagaggtccttgagatggactttgctgaagctgtagaatttttc
agcaactacccctcgatccaacataagcttaaaatcctttgcgatattggccttgactat
ctaaccttaggacagccaagtccaaccttgtctggaggagaagctcagaggataaagctt
gccaaagagtttatcaagtcttctcaacctgggaacctttatcttcttgatgagcctacc
acaggacttcacataaaagacgtagaaaaattagcagaactcttacaaggtttaatccag
aaagggcatacagtaatcgtgatagaacataaccttgaacttatcaaatgggcagactgg
gtggtagaacttggacctgaaggaggagaaaaaggaggagaaatcctttttcaaggtccg
atagaagatttcttaaaagcttctacccctacctctaaaatccttaaaaaatatcttaag
ttgacctaa
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