Thermodesulfobacterium commune: HL41_05240
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Entry
HL41_05240 CDS
T03212
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tcm
Thermodesulfobacterium commune
Pathway
tcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HL41_05240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcm03021
]
HL41_05240
03019 Messenger RNA biogenesis [BR:
tcm03019
]
HL41_05240
Transcription machinery [BR:
tcm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HL41_05240
Messenger RNA biogenesis [BR:
tcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HL41_05240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AIH04201
UniProt:
A0A075WTK4
LinkDB
All DBs
Position
1011967..1013220
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AA seq
417 aa
AA seq
DB search
MYLSELRRKTLTELYSIGEQLNIENIYNYYKKSDVIYNIISTLLNKGVEIIVEGVLEVLP
EGFGFLRFNDYNYLPSSEDIYVSPPQIRKLGLKTGDTILGYIRQPKEGEKYFALAKVEKV
NYLPPEIVRTRTPFDHLTPIHPNQWLRLETTPDNLSTRIIDLFVPIGKGQRGLIVAPPRT
GKTVLLQNIANGIVTNYPDVYLIILLIDERPEEVTEMQRIVPKAEIVSSTFDEPPQKHTQ
VAEIVIEKAKRLVECKYDVVILLDSLTRLTRAYNVVVPSSGKLLSGGIDANALHKPKRFF
GAARNIEEGGSLTIIATCLIDTGSRMDEVIFEEFKGTGNMEIVLDRRLADRRIWPAIDIH
LSGTRKEELLLPPDILHKVWLLRKVLSPLSSVECMEFLIEKMKDTSSNQDFLSKMNQ
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atctatctttcagaacttaggagaaaaacccttacagagctttattctataggagagcaa
ttaaacatagaaaacatctataactattataaaaaatctgatgtaatctacaacatcata
agcactttacttaataaaggggtagagatcatagtagaaggcgtcttagaagttttacca
gaaggctttggctttttgcggtttaacgactacaattatcttccaagttcagaagatatc
tacgtttctcctccacaaataagaaagttgggtctaaaaaccggagatacgatcttaggt
tacattagacaacctaaggaaggagaaaaatattttgccttagccaaggtggaaaaagtt
aactatcttccaccagaaatagttagaaccagaactccttttgaccatcttacccctatc
catcctaaccaatggcttaggttagaaaccaccccagataatctttcaaccaggattata
gatttatttgttcccatagggaaaggacaaagaggtcttatcgttgcacctccaagaaca
ggaaaaacggtcttgttacagaatatcgccaatggaatagtaactaattacccagatgta
tatttaatcattctcttgatagatgaaagacctgaagaagtaacagaaatgcaaagaatc
gtccccaaggctgagattgtaagctctacctttgatgaaccacctcaaaagcacacccaa
gttgctgaaattgttatagaaaaggccaaaagattggttgagtgtaaatatgacgtggta
atcttacttgacagtcttacccgtttaaccagggcttataacgtggtagttccttcaagc
ggaaaacttctttcaggaggaattgatgccaatgccttacacaaacccaaaagattcttc
ggcgctgcaagaaacatagaagaaggaggtagcctcaccatcattgccacctgtcttata
gacacaggaagccgtatggatgaagtaatcttcgaagagtttaaaggtacaggcaacatg
gaaatagtcttagataggcgcttggctgatagaaggatctggcctgccatagacatccat
cttagtggtaccaggaaagaagaacttttattacctcctgatattcttcataaagtctgg
ttattaagaaaggtcctctcgcctctgtcttcagtagaatgtatggagttccttatcgaa
aaaatgaaagacacctcaagcaaccaagactttttaagcaaaatgaatcagtaa
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