Thermodesulfobacterium commune: HL41_08020
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Entry
HL41_08020 CDS
T03212
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tcm
Thermodesulfobacterium commune
Pathway
tcm03030
DNA replication
tcm03430
Mismatch repair
tcm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HL41_08020 (dnaE)
03430 Mismatch repair
HL41_08020 (dnaE)
03440 Homologous recombination
HL41_08020 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcm03032
]
HL41_08020 (dnaE)
03400 DNA repair and recombination proteins [BR:
tcm03400
]
HL41_08020 (dnaE)
Enzymes [BR:
tcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HL41_08020 (dnaE)
DNA replication proteins [BR:
tcm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HL41_08020 (dnaE)
DNA repair and recombination proteins [BR:
tcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HL41_08020 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
AIH04608
UniProt:
A0A075WVV7
LinkDB
All DBs
Position
complement(1510554..1513976)
Genome browser
AA seq
1140 aa
AA seq
DB search
MGEFVHLHLHTEWSLLDGAIRIKDLVNRLLDYQLPGCAITDHGTLYGIIHFYKALKEAGL
KPIIGCEFYVAENSRFDKKVAKRGEAGHHLVLLAKDEVGYKNLIKLASKAYLEGFYYRPR
IDKELLVKHHEGLIALSACLEGEIPKLILFNQIDKAIEVAKWYKDLFKEDFYLEVQRNGL
SEQEVCNQKILEIAEKLKIKCVATADCHYLDKEDALAHEVLLCIQTGHKLSDPDRFKFNT
DMLYLASAEDMAKRFQDLPSEVLTNSLEVFEKVNLELKTGEVLFPKAKVPEGETAESYFS
KKAREGLEKRLSELEETGQLAAEKEVYRQRLEEELEVIIEKGYASYFLIVCDFIEWARSK
GIPVGPGRGSAAGALTSYALGITNLDPIRWGLLFERFLNKERPSLPDIDVDFCKERRDEV
IEYVAQTYGREYIAKIATFGQLKARQVVRDVGRVLGFKPKEIDPIAKMISPGIDVSLEKE
LERPEFQELMQKNEEIKKLFTLAKKLEGLPRHASQHAAGVIISGKPIIETAPLMKVEENE
IVVQFDMKACEAVGLIKFDFLGLKTLTIIDKTLKLIKKYEGIDLDLNRIPLDDPKTFELL
RAGETDGVFQLESQGMKDLLRRLKPSDFNDLIAVLALYRPGPLEGGLVDQYIETKHGRRK
PEYLHPLLEPILKETYGVIVYQEQVMQIAQVMAGYTLGEADLLRRAIGKKEKELMESLKE
EFVKRSVDRGIPEDIAQKVFDLIEKFADYGFNKSHSAAYALVAYQTAYLKAHYPVYFMAS
ILTYEVDKREEVSKYISVANEMGIPILPPDINLSDVGFTVEQGAIRVGLQAVKNVGEEAV
NEIINKRPYSSFWDFCNKVDTKKVNRKTIEALIKAGAFDSLDQNRAKLMHNLPSILSVTT
QTKFSSLFGQATLLNPSTSYTLEEVPEWDLETKLAFEKESLGFYLSDHPVKRLRRFIEVF
TPYNLENLSQVEDGAQVVLLGLISEIKLKQTKNGDKMAILTIEDEFSSERALVFPNLYKQ
NFSVMSEGSILWFRVAVDRDEDSLTLLVEDLAPFNDFRFFKEGVVNVCVPHTLANRQFLE
FLKTFVTKEETNTFPFRLQITYPDAIVNFEINGDKLLLSQENISLLFDNFPQIKLVFTES
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgggggagtttgttcaccttcatcttcatactgaatggagtctccttgacggtgctatc
cgtattaaagacttagtaaataggctcttagactatcagcttcctggctgcgctatcacc
gaccatggcactttatatggaatcattcatttttacaaggctttaaaagaagcaggttta
aagcctattatcggatgcgagttctacgtagcagaaaattcaagatttgataaaaaggtt
gctaagcgcggagaggcaggacatcatctggttcttttagccaaagatgaggtaggatat
aaaaatttaatcaaacttgcctctaaagcctatttagaaggtttttactataggcccagg
atagataaagaacttttggttaaacatcacgaagggctaatagccctttctgcctgttta
gaaggggagatccctaagcttatcctttttaaccagattgacaaagctatagaggtagct
aagtggtataaagacttgtttaaggaggatttttatcttgaagtccagcgaaatggtctt
tcagaacaggaagtctgtaaccaaaaaatcttagagatagcagaaaaactcaaaataaaa
tgtgtagctactgcagattgtcattatttagacaaagaagacgctttggctcatgaggtg
ttgctctgtattcaaacaggacacaagctttctgacccagaccggttcaagtttaacact
gatatgctctatttagcaagtgcggaagatatggccaaaaggtttcaagacctgccttcg
gaggtgcttaccaatagcttggaggtttttgaaaaggtaaatttagaacttaaaacagga
gaagtccttttccccaaggctaaagttcctgaaggagaaactgccgagagttattttagc
aaaaaggctagagagggtcttgaaaaaagactatctgagttagaagaaacaggacaactt
gctgccgaaaaggaggtttatcgtcaaagattggaagaggagttagaggttatcatcgaa
aaaggttatgccagttattttcttatcgtttgtgattttatagaatgggcacggtcaaaa
gggatacctgttgggccaggaagagggtctgctgctggagccctcacctcttatgcctta
ggaattaccaaccttgatcctatcagatggggccttctttttgaaaggtttttaaacaaa
gaacgtcctagtcttcctgatatagacgttgacttttgcaaagaaagaagagacgaagtg
atagaatatgtagctcagacttatgggagagagtatatcgctaaaattgctacctttggt
cagttaaaagcaagacaagtagtgagagacgtaggacgagtccttggttttaaacctaag
gagatagaccctatcgctaaaatgataagtccagggattgatgtgtctttagaaaaagaa
cttgaaaggccagagtttcaagaacttatgcaaaaaaatgaagagataaagaaactcttt
accctggctaaaaaacttgaaggccttccaagacatgcaagtcagcatgcagcaggagtt
attatttcaggtaaacccatcatagagacagctcctttgatgaaggtcgaggaaaatgaa
atagttgttcagtttgatatgaaggcctgcgaagctgttggccttattaagtttgatttc
ttagggcttaaaacccttaccatcatagataaaacccttaaacttatcaaaaaatatgag
gggatagacttagatttaaatcggatccctcttgatgaccccaaaacgtttgaactgtta
agggcaggcgaaactgacggagtctttcaattagaatctcaaggaatgaaagacctttta
agaaggcttaaaccctccgactttaacgaccttatcgcagttttagctctttatcgtcct
ggtcccttagagggtgggctggtagaccagtatatcgaaaccaaacatggaagaaggaag
ccagaatatctacatccacttttagagcctattttaaaagaaacctacggggtaatcgtt
tatcaagaacaggttatgcaaatagcccaggtgatggctggatatactctgggggaagct
gaccttcttaggcgtgctattggaaaaaaagaaaaagagttgatggaaagcctaaaagaa
gagtttgttaaaaggtctgtagatagaggaattcctgaagacatcgctcaaaaggtattt
gatcttatagaaaaatttgctgactacggatttaacaaaagccattcggcagcttatgct
ttagtggcttatcagacagcttatctaaaagcccactaccctgtttactttatggcttct
atccttacttacgaggttgataaaagagaagaggtaagtaaatatatctctgtagccaat
gaaatggggatacctattcttcctccagatataaatttaagtgatgtaggcttcactgta
gaacaaggagctattagagtagggcttcaagcagtaaaaaacgtaggggaagaggcagta
aacgagattattaacaaacgtccttatagttctttttgggatttttgcaataaagtagac
accaaaaaagtaaaccgcaaaactatagaagctttgataaaagctggtgcttttgatagc
ttagaccaaaacagagctaagctaatgcataatcttccttcgatcctctctgttaccacc
caaaccaaattttcttctctttttgggcaagccacccttttaaatccgtctacttcttat
accttagaagaagtacctgagtgggatttagaaacaaagcttgcttttgaaaaagaaagc
cttggtttttatctttcagaccatccagtaaaacgactccggcgttttatagaagtgttt
accccttacaacttagaaaatctttctcaagtagaagacggcgcgcaggtagtgttactg
gggttgatttcagagataaagcttaagcagacaaaaaacggggataagatggctattctt
acgatagaagacgagttttcttcggaaagagctctggtttttccgaatctttacaaacaa
aacttttctgtaatgtccgaaggatctattctctggtttagagttgccgtagacagagat
gaggattccttaacccttttagtagaagaccttgctccttttaatgattttagatttttt
aaggaaggagtggttaatgtttgtgtacctcacaccttagcaaacagacaatttttagaa
tttttgaagacctttgttactaaagaagaaacgaatactttccctttccgccttcagatc
acctatcctgatgccatcgtaaactttgagataaacggagacaagcttttactttctcag
gaaaatatctccttactttttgataactttcctcagataaaactggtctttacagaatca
taa
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