Thermodesulfobacterium commune: HL41_09005
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Entry
HL41_09005 CDS
T03212
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tcm
Thermodesulfobacterium commune
Pathway
tcm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HL41_09005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcm03021
]
HL41_09005
03400 DNA repair and recombination proteins [BR:
tcm03400
]
HL41_09005
Enzymes [BR:
tcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HL41_09005
Transcription machinery [BR:
tcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HL41_09005
DNA repair and recombination proteins [BR:
tcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HL41_09005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AIH04766
UniProt:
A0A075WV30
LinkDB
All DBs
Position
1709373..1713434
Genome browser
AA seq
1353 aa
AA seq
DB search
MKELLSILEKPKDVMKIRALKIGLASPEKIREWSYGEVKKPETINYRTLKPEKDGLFCAK
IFGPIRDYECLCGKYRGMKHRGVICEKCGVEVIQSKVRRERMGHIELAAPVAHIWYLRSI
PSKIGLLLNMTLKEVESILYLERYVVIESQVEEFPVGTILTEDKYSALKEMYGDQIVADT
GASAIYELLRNIDLDKLIQDIQIELQTTHSEARRKKLGKRLQIARAFKQSGNRPEWMILK
VIPVIPPELRPLVPLEGGRFATSDLNDLYRRVINRNVRLKKLIDLDAPEIILKNEKRMLQ
EAVDALFDNGRRGRPVMGPNRRPLKSLSDILKGKQGRFRQNLLGKRVDFSGRSVITAGPE
LRMYQCGLPKKMALELFKPYIYGWLEKHGYATNIKTAKRLVEEEHPAVWDALDEIVKEYP
VMLNRAPTLHRLGIQAFEPVLIDTKAIQLHPLVCVAYNADFDGDQMAVHVPLSVEAQIEN
RVLILSTNNILLPANGIPVVYPTQDMVLGIYYMTLERPFAKGEGKVFRDKDEVILAYQTG
AVHLQAKIKVRIDGKLLDTTVGRVLFSTIVPEEIPFEEYNKPLTKKELQKLIDISYRRAG
IKKTVIFADKLKDLGFAQATEAALSISVDYLTIPKKKAEILAEADRKIAEIWEQYREGLI
TESERYNKAIDIWSNATERVTEEMIKEMETKEYIGPNGEKVIGPSFNPVYIMAFSGARGS
KDQIRQLAGMRGLMAKPSGEIIETPIKSNFREGLSVLEYFVSTHGARKGLADTALKTANA
GYLTRKLVDVAQDCVVTEEDCGTIDGIEVGHLIEAGEIIEPVWDRVLGRVALEDILDPIT
GEVLIEANQEIDEEGVKKLKEAGIEKVMIRSVLTCEAKHGVCRKCYGRDLATGKLVEIGE
AVGIIAAQSIGEPGTQLTMRTFHIGGAVGKALEQSEHRAQSRGLIKFLNLRLVRREDGTL
VALNRQGEIAIVSPDGRILEKYPVTYGAKIKVEEGQEVKPGDLLVEWDPYTTPIIAEVSG
RVKFGDIIDGVTVDEKIDVTTGRASIIVRDYKLTDYRPRISIKDEKGRTIDLPDGRGKAR
YELPVGAIISVQEGEMVKAGDIIARIPRETLKAKDITGGLPKVTDLFEARKPKEYATITE
IDGTVVFEKEARGKKKIVIQPEVGEPLEYYISKGKHILVREGDVVKAGDPLVEGSPNPHD
ILKVKGVKGVARFLVEEIQEVYRLQGVKINDKHFEVIVKQMLKKVKIKDPGDTNFMIGEY
VDKVKFEEENEKIIATGGKPAVAEPVILGITKAALLTDSWLSAASFQETTRVLTEASIAG
KVDYLKGLKENVIIGRLIPAGTGRIVYEEKGWL
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaactcctttctattttagaaaaacctaaagatgtaatgaaaataagggcatta
aaaataggattagcctctcctgaaaaaataagagaatggagctacggagaggttaaaaaa
ccagagacgattaactataggactttgaagcctgaaaaggatggtttattttgtgctaaa
atttttggtcctattagggattatgagtgtctttgtggtaagtatcgcggaatgaaacat
agaggggttatctgtgagaagtgcggggttgaggttatccagagcaaggttagaagagaa
agaatgggacatattgagttggctgcaccggtagctcatatttggtatttaagaagtatt
ccctctaaaataggtcttttactcaacatgacacttaaagaagtagaatctattctttat
ttagaaagatatgtagtcatagaaagtcaagtagaagaatttcctgtgggtaccattctt
actgaagataaatactccgctttaaaagagatgtatggagaccagatagtagctgataca
ggggcttcagctatttatgagcttttaagaaacatagaccttgacaaacttattcaggac
atccagatagaacttcaaaccacccacagtgaggctcgcagaaagaaacttggtaaaaga
cttcagatagctagagcatttaaacagtcaggtaataggcctgaatggatgattttaaag
gttataccagttattccacctgagttgaggcctttagtacctttagagggaggtagattt
gctacctcagacttaaacgacctttacagaagggttatcaaccgtaacgtgagacttaaa
aagttgatagaccttgatgctcctgaaataattttgaaaaacgaaaagaggatgttacaa
gaggctgttgatgccctttttgataacggaagaagaggacgtcctgtgatggggcctaat
agaaggcctttaaaaagtctttctgatattcttaagggtaaacaaggcagatttagacag
aatcttttaggtaaaagagtggatttttcaggtaggtctgttattaccgcaggtcctgag
ttacgaatgtatcagtgtggtttgcctaagaagatggctttagaactttttaaaccctat
atttatggttggttagaaaagcatggatatgctaccaacatcaaaaccgctaaaaggttg
gtggaagaggaacatcctgcagtttgggatgcccttgatgagatcgtaaaagaatatccg
gtaatgttaaaccgtgctcctactttgcataggttaggtattcaggcctttgaaccagtg
ttgatagacacaaaggccatccagctacatccactggtctgtgtagcttataacgctgac
tttgacggagaccagatggctgtgcatgttccgctttcggtagaggcgcagatagaaaat
agagttcttattctttcaaccaacaacatccttcttcctgcaaacggtattcctgtagtt
tatcctacccaagatatggttttaggaatttactacatgacgttagaacgtccttttgcg
aagggagaaggtaaagtttttagagataaagatgaggtgatccttgcatatcagacagga
gctgtccatctacaagcgaagataaaggtaaggattgatggtaaacttttagatacaacg
gtaggtagagtcctgttttcgaccatcgttcccgaagagattccttttgaagagtataat
aaaccattgaccaaaaaagagcttcaaaagttgatagacatttcttatcgtagagcaggt
attaagaaaacagtaatttttgcggataaattaaaagatttggggtttgcacaagctact
gaagctgctctttctatttctgtggattatcttaccattcctaagaaaaaagcggaaatt
ttggctgaggcagatagaaagattgcagagatctgggagcagtatagagaaggtttgatc
accgagagtgaaaggtataacaaagcaatagatatatggtctaatgctactgagcgtgtt
actgaagagatgattaaagaaatggaaaccaaggaatatatcgggcctaacggagagaaa
gtgataggtcccagctttaacccagtctacatcatggccttttctggagctcgtggttct
aaagatcagataaggcagcttgctggtatgagaggtttgatggctaaaccctctggagaa
attattgaaacaccgattaaaagtaatttcagagaagggctttcagttttggaatacttt
gtgtctacccatggagcccgtaaaggacttgcagacacagctttaaaaaccgctaatgcc
ggatatttaacaagaaaattagtagatgttgctcaagactgtgtggtaactgaagaagat
tgtggaaccatagatggtatagaggtaggtcatcttattgaggcaggtgagattatcgaa
cctgtttgggatagagtgttgggaagggttgccttagaagatattttagaccctattaca
ggagaggtattgatcgaagctaatcaagaaatagatgaagaaggggttaaaaagcttaaa
gaagcaggaatagagaaggtcatgataaggtctgtgcttacctgtgaggcaaagcatgga
gtttgtagaaagtgttatggaagagaccttgctactggaaagttggtggaaataggagaa
gccgtagggattattgccgctcagtctattggagaacctggaactcagcttacgatgaga
accttccacatcggaggtgcggtaggtaaggctttagaacaaagcgaacacagagctcag
tcaagaggtttgataaagtttcttaatttaagactggttagaagggaagatggtacttta
gtggctttaaacagacaaggagagattgctatcgtgtctcctgacggtaggattttagaa
aaatatccagtcacctatggtgctaagattaaagtagaagaaggtcaagaggtaaaacct
ggagacctcttggtagaatgggatccttataccacacctatcatcgccgaagtttctgga
agggtaaagtttggagatatcatagacggggtaacggttgatgaaaagatagacgtaacc
accggtagagcaagtattatcgtaagagactacaaacttaccgactatagaccaaggatt
tctatcaaagatgagaaaggaagaaccatcgaccttccagacggaagaggtaaagccaga
tatgagctaccggtaggagctatcatcagcgttcaagaaggagagatggtaaaggcagga
gatatcatcgcaagaattcctcgagaaactttgaaagctaaagacattaccggaggtctt
cctaaggttaccgatttatttgaagcacgtaaacctaaagagtatgctactatcactgag
atcgatggaacggtagtgtttgaaaaagaagccagaggtaagaaaaagatagttattcaa
cctgaggtaggagagcctttagagtactatatctctaaaggtaaacatattttggtaaga
gaaggcgatgtggttaaagctggagatcctttggtggaaggttctcctaaccctcacgat
atcctaaaagttaaaggagttaaaggggttgcaaggtttttggttgaagagattcaggaa
gtttacagacttcaaggtgttaagataaacgacaaacactttgaggttatcgtaaaacag
atgcttaaaaaagtgaaaataaaagacccaggcgataccaattttatgatcggtgagtat
gtggataaggttaagtttgaagaggaaaacgaaaaaatcatagctactggaggtaaacca
gcagtagccgaacctgtaatccttggtataacaaaagcagccttgcttactgattcctgg
ttgtctgctgcctccttccaggaaactacgagagttcttaccgaggcctctattgccggt
aaggtagactatctaaagggactaaaagaaaacgtaatcattggaaggttaattcctgca
gggacaggaaggattgtttacgaagaaaaaggatggctgtaa
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integrated database retrieval system
