Thermomonas carbonis: H9L16_05070
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Entry
H9L16_05070 CDS
T06786
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tcn
Thermomonas carbonis
Brite
KEGG Orthology (KO) [BR:
tcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcn03019
]
H9L16_05070 (hrpB)
Enzymes [BR:
tcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H9L16_05070 (hrpB)
Messenger RNA biogenesis [BR:
tcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H9L16_05070 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QNN70956
UniProt:
A0A7G9SSY1
LinkDB
All DBs
Position
complement(1097011..1099626)
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AA seq
871 aa
AA seq
DB search
MPEIGFPIQSLLPEIRASLQIHPRLVLEAPPGAGKTTQVPLALLDANWLGGRKIVMLEPR
RVAARAAAGFMAKQLGEVVGETVGYRIRFENKVGADTRIIVVTEGILTRMLQDDPMLEGV
GAILFDEFHERHLAGDLGLALALDVQFGLREDLRIVVMSATLDGERLAQFLDAPRLSSAG
RSYPVEVAHFPARREEAIEHQAKRAIEHALATHPGDLLVFLPGQREIARVDAALAGMQPM
SAPGELRQARHGGRAPESGQDAPTEGKTIPPHRAAAVDAIEVLALHGELPIEQQTRVLQP
AADGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPRFDPNSGFARLDVVSISQASADQR
VGRAGRVADGFAYRLWPQSQRLEPQRRPEIAQVELASLALELAAWGSDALRFVDAPPQGA
VAAARDLLQRLDALDAGNAITPRGRRMLALGTHPRLAAMLLASNEPSRIALACDLAALIE
ARDPLRSRSDALADRWQALAAFRNGRVGADANRSALAAIDAASKQWRRRLRCNAQPPANV
PAHDLGDLLAHAFPDRIAKQHPQDPKRYLLANGRMAKLFDDSAVYGEPWLVASELRFEAK
DALLLRAAPVDERHLRQAFAAHFREGDEVRWDATRRALASERIARFDGIVLSSKPAGRVD
PARAARALTDAVRDLGLSALPWSESLSQWRVRVQCLRAWMPELGLPDLSDAALLASLDTW
LMPAFAGKTRLDALDESALADALKSAVDWSLRQRIDQLAPTRIDVPSGMQRAIAYALDDH
GEPASPVLAVKLQELFGLAQTPRIVDGRVPLTIHLLSPGGRPLQVTQDLAGFWERTYPEV
RKEMKGRYPRHPWPNDPWNAAATHRAKPRGT
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaatcggtttcccgatccaatccttgctgccggagatccgtgcatcgctgcag
atccatccgcggctggtgctggaagcgccgccgggtgcgggcaagaccacccaggtgcca
ttggccttgctcgatgccaattggctcggcggccgcaagatcgtgatgctggaaccgcgc
cgcgtcgccgcgcgcgccgcagccggtttcatggcgaaacaactcggagaggtggtcggc
gagaccgttggctaccggatccgtttcgagaacaaggtcggtgcggacacgcggatcatc
gtggtcaccgaaggcatcctcacccgcatgctgcaggacgatccgatgctcgaaggcgtc
ggtgcgatcctgttcgacgaattccacgagcgccacctcgccggcgacctcggccttgcg
ctcgcgctcgacgtgcaattcggcctgcgcgaagacctgcgcatcgtggtgatgtcggcg
acgctggatggcgagcgcctcgcgcagttcctcgatgcgccacgcctgagcagcgccggc
cgcagctatccggtcgaagtcgcgcactttcccgcgcgtcgtgaggaagccatcgagcac
caggcgaagcgcgcgatcgagcacgcgctggcgactcatcccggtgacctgctggtattc
ctgccggggcaacgcgagatcgcgcgcgtcgatgccgcgttggccggcatgcagccgatg
tctgccccgggggagttgcgacaagcgcgccatggagggcgcgcgcccgaatcggggcag
gatgccccgactgaggggaaaacaattcccccgcaccgggcagcggcggtggatgcgatc
gaagtcctcgcgctgcacggcgagctgccgatcgaacaacagacccgcgtgctgcaaccc
gccgccgatggccgccgccgcgtggtgctggcgaccaatgtcgccgagtccagcgtgact
ctgccgggcgtgcgcgtggtgatcgacagcggcctcgcacgcgagccgcgcttcgatccc
aacagcggcttcgcgcgcttggatgtcgtgtcgatttcgcaggcgtccgccgaccagcgc
gttggtcgtgccggtcgcgttgccgacggcttcgcatatcggctgtggccgcagtcgcaa
cggctggagccgcagcgacgcccggaaatcgcgcaggtcgagttggcttcgctcgcgctg
gaactcgcggcctggggcagcgatgccctgcgcttcgtcgacgcacctccgcaaggcgcg
gtggccgcggcgcgcgacctgctgcaacggctggatgcgctcgatgccggcaatgcgatc
accccacgcggtcgccgcatgctcgcgctgggcacgcatccgcgactggcggcgatgttg
ctggcctcgaacgagccatcccgcatcgcactggcttgcgacctcgccgcattgatcgaa
gcgcgcgatccgttgcgcagccgcagcgatgcattggccgaccgctggcaggcactggcc
gcgttccgcaacggccgcgtcggtgccgatgcgaatcgttcggcgctggccgcgatcgat
gcggcatcgaaacaatggcgtcgccgcctgcgttgcaacgcgcagccacccgcgaatgtg
ccggcgcatgacctcggcgacttgctcgcgcatgccttccccgaccgcatcgcgaaacag
catccgcaggatccgaagcgctacctgctggcgaacggacggatggcgaaactgttcgac
gattccgccgtttacggcgagccgtggctggtcgccagcgaactgcgtttcgaggcgaaa
gacgcgttgctgctgcgtgcggcaccggtcgacgaacgtcatctgcgacaggccttcgcc
gcgcatttccgcgaaggcgacgaagtgcgctgggatgcaacccgtcgcgccctggccagc
gaacgcatcgcccgtttcgacggcatcgtgctgtccagcaaaccggccgggcgcgtggat
ccggcgcgggcggcgcgcgccctgaccgacgccgtgcgcgacctcggcctgtcggcgctg
ccgtggagcgagtcgttgtcgcaatggcgggtgcgcgtgcagtgcctgcgcgcgtggatg
ccggaactgggattgccggacctgtcggatgccgcgctattggcctcgctcgacacgtgg
ttgatgccggccttcgccggcaagacccggctggatgcgctcgacgaatcagcgctcgcc
gatgcgttgaaatccgccgtcgactggagcctgcgccagcgcatcgaccaactcgcaccg
acgcggatcgatgtgccgtccggcatgcagcgcgcgatcgcgtacgcgctcgacgaccac
ggcgagccggcctcgccggtgctggcggtgaagctgcaggaactgttcggcctggcgcag
accccgcgcatcgtcgatgggcgagtgccgctgacgatccatctgctctcgcccggtggg
cgaccgttgcaggtgacccaggacctggccgggttctgggaacgcacctatcccgaggtc
aggaaagaaatgaagggccgctatccgcggcatccgtggccgaacgatccgtggaatgcc
gctgcgacgcatcgggcgaagccgcgcggtacgtga
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