Thermomonas carbonis: H9L16_08570
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Entry
H9L16_08570 CDS
T06786
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tcn
Thermomonas carbonis
Brite
KEGG Orthology (KO) [BR:
tcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcn03019
]
H9L16_08570 (hrpA)
Enzymes [BR:
tcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H9L16_08570 (hrpA)
Messenger RNA biogenesis [BR:
tcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H9L16_08570 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
WHD_HA2
HA2_C
AAA_19
AAA_22
SRP54
nSTAND3
nSTAND_NTPase5
Cas3-like_C_2
NACHT
AAA_30
T2SSE
ABC_tran
TsaE
Motif
Other DBs
NCBI-ProteinID:
QNN68798
UniProt:
A0A7G9SLS3
LinkDB
All DBs
Position
1881334..1885389
Genome browser
AA seq
1351 aa
AA seq
DB search
MASIQPDSKHASTPSPAQARRAIDGALSRDRGRLLGLWAKWNAKAADDALRQAFSAKLQA
SVAERERRAAALPAATVDASLPIAAHADDIVALIRKHQVVVLAGETGSGKTTQLPKICLL
AGRGAAGMIGCTQPRRIAARSVARRVAEELQVQLGGAVGFQVRFNDAVGDTTAIKFMTDG
ILLAEIQTDRWLSKYDTIIVDEAHERSLNIDFLLGYLKQLLPKRPDLKLIVTSATIDTER
FSAHFAGAPVVNVEGRGYPVEMRYRPLGEKPGSESTFSQDAVSPIPAKGKVDSDPGFSGH
SMLDGIVAACDEIQRDKGIGDTLIFLPGEREIREAHRALEKRKYRHTEVLPLYARLSAKD
QDRVFHPGSQRRIVLATNVAETSLTVPRIHYVVDPGVARVKRYSPRQKLDRLHIEAISQA
SANQRAGRCGRIAPGTCIRLYSEADFQSRAEFTDPEIRRAALAGVILRMLSLGLGDIEAF
PFLEPPDSRAVADGWQQLNELGAVDAQRKLTAIGRTMSKLPVDVKLARMLVAATTHGVLR
EMIVIASFLGISDPRERPADARAAADAAHAQFADPKSEFVGILKLWQAYREAHEELTQSQ
LRKWADKQFLGFLRLREWWELHRQLKLQCQELGWETGEKPGSESTFPEKTHGSKVSERKV
DSDPGFSSFAALHRALIAGLPTHLGNRGDRGLYDGPRGRKFQLFPGSNLASKPPPWVLSA
TLLDTEKVWSLTNAAIEPDWVIAELPHLLARRYHEPHWSRAQGRVLGSEQISLFGLVLAP
KKPVHYGGLFPEESRVIFVREALLTGEINTRSPFLQRNLRTLEEAKQEEAKLRRVGLVVD
EDWQARWYLDRLPPHVHNAQALDAWVAKLPKEQKGLLEWSRDDLLVVDQTDAALYPAYIA
LGTARLAVQYRFDPGAIDDGMTVAVPLHLLNALDDARLSWLAPGFVADKATALIKSLPKA
LRRNFVPAPDFGRAFAEAYSQPEADSIEGALARFLKKLSGVDVTALDFDAAGIDAHLLAN
LRVFDSDGKHVLAESRDVPELRTRFGRRAAEAFARHAAQGMAQAGLIDFPIQPVPLSVAG
AGGVPAWPALQDDGDAASLAVHAQREVAERLHPQGVRRLLAIALSDKLKQARRQLPVPPK
TSLLYAAIESASPRRDGLKDADRLRADLVDGAFAALAADGLLAIRDADAFAQRRDVVGKG
VFAEAMRRLQQAEAILGLVAEVRAKLESKLIGWARANLDDLQAQLDGLVPPGFLRDVPAD
VLADYPRYLKAMSLRAERAQRDPVRDQQRMLELAPFVSALATADATHPEAVALRWDLEEL
RVQLFAQELGAKGGVSPKRLAARLERLQRTG
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatccagcccgattccaagcacgcctccaccccgtccccggcacaggcccgg
cgcgccatcgatggcgcactgagccgcgaccgcgggcgcctgctggggctgtgggcgaaa
tggaacgcgaaggcagccgacgacgcgctgcgccaggccttcagcgcgaagctgcaggcc
tcggtcgccgagcgcgaacgccgtgcagcggcattgcctgcggccaccgtggatgcgtcc
ctgccgatcgccgcgcatgcggacgatatcgtcgccctgatccgcaagcaccaggtcgtg
gtgctggccggcgagaccggatccggcaagaccacccaactgccgaagatctgcctgctc
gccggtcgtggggccgccggcatgatcggctgcacccagccacggcggatcgcggcgcgc
tcggtggcgcggcgggtggccgaagaactacaggtgcagctcggtggcgcggtcggcttc
caggtgcgcttcaacgatgcggtcggcgacaccaccgcgatcaagttcatgaccgacggc
atcctgctggcggagatccagaccgatcgttggctgtcgaagtacgacacgatcatcgtc
gacgaggcccacgagcgcagcctcaacatcgacttcctgctgggctatctcaagcagttg
ctgcccaagcgccccgacctgaagttgatcgtgacctcggcgaccatcgacaccgaacgc
ttctccgcgcacttcgcaggcgcgccggtggtcaatgtcgaagggcgcggctatccggtg
gagatgaggtatcgcccgctcggtgagaaaccggggtcagagtcgactttctcccaggat
gccgtttcgccgattcccgcgaaagggaaagtcgactctgaccccggtttctccgggcac
tcgatgctggacggcatcgtcgctgcctgcgatgaaatccagcgcgacaagggcatcggc
gacacgttgatcttcctgccgggcgagcgcgagatacgtgaagcccaccgggcactggag
aagcgcaagtaccgccacaccgaagtgctgccgctgtacgcgcggctgtcggcgaaagac
caggatcgcgtgtttcatcccggttcgcagcggcggatcgtgctggccaccaacgtcgcc
gagacctcgctgacggtgccgcggatccattacgtagtcgatccgggcgtggcgcgcgtc
aagcgctacagcccgcggcagaaactcgatcgcctgcacatcgaggcgatcagccaggcg
agcgccaaccagcgtgccggccgttgcggccgcatcgcgccgggcacctgcatccgcttg
tattccgaggccgatttccagtcgcgcgcggagttcaccgatccggaaatccgccgcgcc
gcgttggccggggtgatcctgcgcatgttgtcgcttgggcttggcgacatcgaggcgttc
ccgttcctggagccgccggattcgcgtgcagtggcggacggttggcagcagttgaacgaa
ctcggcgcggtcgacgcgcagcgcaagctgaccgcgatcggccgcacgatgtcgaagctg
ccggtcgacgtgaagctggcgcgcatgctggtcgccgcgaccacgcatggcgtgttgcgc
gagatgatcgtgatcgcaagttttctgggcatttccgatccgcgcgagcgcccggccgat
gcccgcgccgctgcggatgccgcgcacgcgcagttcgccgatccgaagtcggaattcgtc
ggcatcctcaagctgtggcaggcctatcgcgaagcgcacgaggagttgacccagtcgcag
ttgcgcaagtgggccgacaagcagttcctgggcttcctgcgcctgcgcgaatggtgggag
ctgcatcggcagttgaagctgcagtgccaggagttgggttgggaaacgggtgaaaaaccc
gggtcagagtcgactttccccgaaaaaactcatggttccaaggtgagtgagcggaaagtc
gactctgacccgggtttttcttccttcgcagcgctgcatcgcgccctgatcgccggcctg
ccgacccacttgggcaaccgcggcgatcgcggcctctacgacggcccgcgcgggcgcaag
ttccagttgttcccgggctccaacctggccagcaagccgccgccgtgggtgctgtcggcg
actttgctggataccgagaaagtctggtcgttgaccaacgccgcgatcgagcccgactgg
gtcatcgccgagctaccgcacctgctggcgcgtcgctaccacgagccgcactggtcgcgt
gcgcagggacgcgtgctcggcagcgagcagatctcgctgttcgggctggtgctggcgccg
aagaagccggtgcactacggcgggctgttcccggaggaatcgcgggtgatcttcgtgcgc
gaggccttgctcaccggcgagatcaatacccgcagcccgttcctgcaacgcaacctgcgc
acgctggaagaggcgaagcaggaagaagcgaaattgcgccgcgtcggcctggtggtggac
gaggactggcaggcgcgctggtacctggaccggctgccgccgcacgtgcacaacgcgcag
gccctggatgcgtgggttgcgaagttgccgaaggaacagaagggcctgctggaatggtcg
cgcgatgacctgctggtggtcgaccagaccgatgcggcgctgtatccggcgtacatcgca
ttgggcaccgcgcgcctggccgtgcagtaccgcttcgatcccggcgcgatcgacgatggc
atgacggtggcggtgccgttgcacctgctgaacgcgctcgacgatgcgcgactgtcgtgg
ctagcgcccggcttcgtcgccgacaaggcgaccgcgctgatcaagtcgctgccgaaggcg
ctgcgccgcaatttcgtgccggcgccggatttcggtcgggccttcgcggaagcgtattcg
cagcctgaagccgactccatcgaaggcgcgctcgcccgtttcctcaagaagctgtccggg
gtcgatgtcactgcactggatttcgacgcggccggcatcgacgcgcacctgcttgcgaac
cttcgcgtgttcgacagcgacggcaagcacgtgctcgccgaatcgcgcgacgtgcccgag
ttgcgcacgcgctttggccggcgtgctgccgaggccttcgcccgccatgccgcgcagggc
atggcgcaggccggcctgatcgatttcccgatccagccggtgccgctcagcgtggccggc
gcgggcggggtgccggcgtggccggcgctgcaggacgatggcgatgcggcatctctcgcc
gtgcatgcgcaacgcgaggtcgccgaacgcctgcacccgcagggcgtgcgccggttgctg
gcgatcgcgctctcggacaagctgaagcaggcgcgccgacagttgccggtgccgccgaag
acttcgttgctgtacgccgcgatcgagtccgcatcgccgcggcgggatggcctgaaggat
gccgatcgcctgcgcgccgatcttgtcgatggggcgttcgccgcgctcgcggccgatggc
ctgctcgcgatccgcgatgccgatgcgttcgcgcagcgtcgcgacgtcgttggcaagggc
gtgttcgccgaagcgatgcgccggctgcagcaggccgaagcgatcctgggcctggtcgcc
gaggtgcgggcgaagctggaatcgaagctgatcggctgggcgcgcgcgaacctggacgac
ctgcaggcacaactggacggactggtgccgcccggcttcctgcgcgacgtgccggccgac
gtgctggccgattatccgcgctatctcaaggcaatgtcgctgcgtgccgaacgcgcgcaa
cgcgaccccgtgcgcgaccagcagcggatgctggaactggcgcccttcgtttccgcgctg
gcgacggccgatgcgacgcatccggaagccgtggccttgcgctgggatctggaggaactg
cgcgtgcaattgttcgcgcaggaactcggtgccaagggcggggtatcgccgaagcgcttg
gcggcgcggctggaacgcctgcaaagaaccggatga
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