Thermomonas carbonis: H9L16_11620
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Entry
H9L16_11620 CDS
T06786
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tcn
Thermomonas carbonis
Pathway
tcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L16_11620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcn03019
]
H9L16_11620
03009 Ribosome biogenesis [BR:
tcn03009
]
H9L16_11620
Enzymes [BR:
tcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H9L16_11620
Messenger RNA biogenesis [BR:
tcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L16_11620
Ribosome biogenesis [BR:
tcn03009
]
Prokaryotic type
rRNA processing factors
H9L16_11620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QNN69320
UniProt:
A0A7G9SN95
LinkDB
All DBs
Position
complement(2505748..2508846)
Genome browser
AA seq
1032 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQNLYDIDIEQPSRENKKSNIYKGRITRLEPSLEAAFVEY
GAERHGFLPMKEISRDYFQAGVDPNKGTIRELLREGQEVVVQVDKDERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGDDRAELKKAMDALAIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLSIWRAIADAALSKPSPFLIYQESRLIVRALRDYMRSDVGEILVDTPEMYAEAL
DFVEQVMPHNKRKLKHYTDDTPLFNRFQIESQIENAYERTIRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQRDVENK
LQNALKYDRARVQIGRISRFGLLEMSRQRLRNSLGEASQIVCPTCEGHGRMRSVESLALS
IIRVAEEHAMKDNTGQVLVQVPVEIANFLLNEKRSALREIEARHDAPIVIVADEQLHTPH
YEVTRIRENEMGEETAKPSYQRGTPRKLATIALSKAQLNIPAAPAVTNVKPAQPAPLREP
RPMPAEAAQPAPVPVAQVPAPQQVQASGGVIGWLRGLFVGAPATPEPAKVEQPGGRREER
GNRGRNDRDGRGNRDSRRDERGNRDEGRRNAQGEARGNKPQGEQKQPQQPQQQKPRNDKQ
QQQPKQDKQSQPQQDKQPKQPQQQKPQGDKQPQAPRQDRQQAPKPVVAEADIEIVASPVA
VAAASAAAPIVAAQDETGLTTAAGIESQDEANASDDANGEAGGKRRRGRRGGRRRRRGAG
EAGGVADDGSLDQDGGADEALGVDSGQPEFDFDDIAPAAPQNSVAADETTRVPSPAVAAV
AAMAAAPVLVEAVAASAVAAESRAEPIVEAKAGIESLVADQPASIQSDAEAVIVESATFD
TATSRAAPLITVSETVVDTVIEAVPPVDDTTATAAVEVEPAASEPTQVEIAIPAMEAPVA
VEPALAEVASVQPAIEAVAAEPAAAAADTASVDDEAARRAEQLRGLFQTARHEPVSAPQA
QDGAAAEANRGG
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaatgccacgcaggcggaagaactgcgggtagccatcgttgac
ggccagaacctgtacgacatcgacatcgaacagccgtccagggaaaacaagaagtccaac
atctacaaaggccggatcacccggcttgaaccgtccctcgaggcggccttcgttgaatac
ggcgcggaacgccacggcttcctgccgatgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccccaacaagggcacgatccgcgagctgctgcgcgaaggccaggaagtcgtg
gtccaggtcgacaaggacgagcgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaattcaccgaccgccggtggcgtgtcgcgc
cggatcgagggcgacgaccgcgccgagctgaagaaggcgatggacgcgctggcgatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtgggtcgcgatgccgaagaactgcag
tgggacctcgactacctgctgagcatctggcgcgcgatcgccgacgccgcgctgagcaag
ccgtcgccgttcctgatctaccaggagtcgcgcctgatcgtgcgcgccctgcgcgactac
atgcgctccgacgtgggggagatcctggtcgacaccccggagatgtacgcggaggcgctg
gacttcgtcgaacaggtgatgccgcacaacaagcgcaagctgaagcactacaccgacgac
accccgctgttcaatcgcttccagatcgagtcgcagatcgagaacgcctacgagcgcacc
atccgcctgccgtccggcggcgcgctggtgatcgaccagacggaggccttgaccgcgatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgcgttcaacacc
aacctggaggcggccgaggaagtggcccgccagttgcgcctgcgggaccttggcgggctg
gtggtgatcgacttcatcgacatgtccagcaacaagcaccagcgcgacgtcgagaacaag
ctgcagaacgcgctcaagtacgaccgcgcgcgcgtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgcaacagcctgggcgaagccagccagatc
gtctgccccacctgcgaaggccacggccgcatgcgcagcgtggaatcgctggcgctgtcg
atcatccgcgtcgccgaggagcacgcgatgaaggacaacaccggccaggtgctggtgcag
gtgccggtggaaatcgccaatttcctgctcaacgagaagcgcagcgcgctgcgcgaaatc
gaggcccgccacgacgcgccgatcgtgatcgtcgccgacgagcaactgcacacaccgcac
tacgaagtcacgcgcatccgcgaaaacgagatgggcgaggaaaccgccaagcccagctac
cagcgcggcacgccgcgcaagctcgccaccatcgcgttgagcaaggcgcagctgaacatc
ccggctgcgccggcggtgaccaacgtcaagccggcccagccggcaccgctgcgcgaaccg
cgcccaatgccggcggaagccgcgcagccggccccggtgccggtcgcgcaggttcccgcg
ccgcagcaagtccaggccagcggcggcgtcatcggctggctgcgtggcctgttcgtcggt
gcgccggccaccccggagccggccaaggtcgagcaacccggcggtcgtcgcgaagagcgc
ggcaaccgcggccgcaacgaccgtgacggccgcggcaaccgcgattcacgtcgcgacgaa
cgcggcaatcgcgatgaaggccgtcgcaatgcgcagggcgaggcacgtggcaacaagccg
caaggcgaacagaagcagccgcagcagccacaacagcaaaagccacgcaacgacaagcag
caacagcagccgaagcaggataagcagtcccagccgcagcaggacaagcagccgaagcaa
ccgcagcagcagaagccacagggcgacaagcagccgcaagcgcccaggcaggacaggcaa
caggcgccgaagccagtcgttgccgaggccgacatcgagatcgtggcgtcgcccgtcgct
gtcgccgcggcgagtgcggcagcaccgatcgtggcagcgcaggacgagaccggcctgacc
accgccgccggcatcgaatcgcaggacgaagccaatgcctccgacgatgccaacggcgaa
gcgggcggcaaacggcgtcgtggccgtcgcggcggtcgtcgtcgtcgtcgtggtgccggt
gaagccggtggcgtggccgatgacggctcgctcgaccaggacggcggtgccgacgaggca
ttgggcgtcgacagcgggcaacccgagtttgatttcgacgacatcgcgccggctgcgccg
caaaacagcgtcgccgcggatgaaacaacccgcgttccctcgcccgccgttgccgccgtc
gctgccatggccgctgcacccgtgctcgtggaagcggtcgcggcatctgccgtcgccgca
gaatcgcgtgctgagccgatcgtcgaagccaaggcagggatcgagtcgctcgtcgccgat
cagcccgcatcgatccagtcggacgcagaagcggtgatcgtcgaaagcgccacgttcgat
accgctaccagcagggccgcgccgctcatcacggtgagcgagaccgtcgtggacacggtg
atcgaagccgttccgccggtcgacgacacgaccgcgaccgctgccgtggaagtcgagccc
gcggcaagcgagccgacccaagtcgaaattgcgatcccggcgatggaagcgcctgtcgct
gtcgagcccgcactcgccgaagtggcgagcgtccagcctgcgatcgaagccgtcgccgcc
gagcccgcagccgcggcagccgacaccgcctcagtcgacgacgaagcggcacgtcgtgca
gagcagctgcgcggtctgttccagaccgcacgccatgagcccgtcagcgcgccgcaggcg
caggacggcgccgctgccgaggccaaccgcggcgggtga
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