Thermobacillus composti: Theco_0272
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Entry
Theco_0272 CDS
T02394
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tco
Thermobacillus composti
Pathway
tco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Theco_0272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tco03021
]
Theco_0272
03400 DNA repair and recombination proteins [BR:
tco03400
]
Theco_0272
Enzymes [BR:
tco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Theco_0272
Transcription machinery [BR:
tco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Theco_0272
DNA repair and recombination proteins [BR:
tco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Theco_0272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AGA56516
UniProt:
L0E9Z8
LinkDB
All DBs
Position
299242..302862
Genome browser
AA seq
1206 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAIKKLLM
DIDLDREIDILKEELRTAQGQRRNRAIKRLEVLEAFRNSGNRPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNPEAKGTGMMFATVNEAISAYHRDIVSLHARIVIP
ARALNKKMFTEEQERSLIVTTVGKLIFNEIFPDTFPYINEATKDNLLKGTPERWFVKEKG
ADVNAYIAQLPIASAVGKEYLGQIIAECFRLYQTTTTSIILDKIKQLGFTYSTRAGITIA
ISDVVVPDAKKEILAESEEKVRVVTNQYRRGLITDEERYDRVIEIWGQTKDRITDVLMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGITVTKIHDGKEVIEDL
YDRIEGRYTAAAVRHPETGEIIVGKGEMIDAEIAEKIIAAGIEKLEIRSVLSCRARHGVC
KICYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKDIRDAKDRREIEVEGEAETKVYSVSYGSRIRVNIGDRVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
VDAGDTQLLPGSYVDIHEYEAANREAILAGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMAHYRNIRFAGLEEDEQQSEEVLE
GVAVES
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgttaacaacttcgagtttatgaagatcggtctggcttctccggacaagatc
cgttcctggtcgcgcggagaagtgaagaaacccgagacgatcaactatcggacgctcaaa
cccgagaaggaagggctgttctgcgagaaaattttcggtccgacgaaggactgggagtgc
cactgcggcaagtacaagcgcgtgcgttacaaaggcgtcgtctgcgaccgctgcggcgtc
gaagtgacgcgcgcgaaggtgcgccgcgagcggatgggccacatcgagctggccgctccg
gtgtcgcatatctggtatttcaaagggattccgagccggatggggctggcgctcgacatg
tcgccgcgttcgctcgaggaggtcatctacttcgcatcctatgtcgtgaccgacccgggc
gacacgccgctggagaagaagcagctcctctccgagaaggaataccgcagctaccgcgag
aagtacggctacggcttccaggccggcatgggcgccgaagcgatcaagaagctcctgatg
gacatcgacctcgaccgcgagatcgatatcctcaaggaagaactgcgcacggcgcaaggc
cagcgccgcaaccgcgcgatcaagcggcttgaggtgcttgaggcgttccgcaattcgggc
aaccgtccggaatggatgattctcgacgtgctgccggtcattccgccggaactgcgcccg
atggtgcagctggacggcggccggttcgcgacgagcgacctgaacgacctgtaccgccgc
gtcatcaaccggaacaaccggctgaagcggctgctcgatctcggcgcgccggacatcatc
gtgcagaacgagaagcggatgctgcaggaagccgttgacgcgctgatcgacaacggccgc
cgcggccgtccggttaccggaccgggcaaccgtccgctgaaatcgctcagccatatgctg
aagggcaagcagggccggttccgtcagaacctgctcggcaaacgggtcgactactccggc
cgttccgtcatcgtcgtcgggccgagcctgaagatgtatcagtgcggcctgccgaaggag
atggcgctggagctgttcaagccgttcgtcatgaaggagctcgtgaacaaggggctcgcg
cacaacatcaagagcgcgaagcgcaaggtcgagcgcgtgagcccggaagtctgggacgtg
ctcgaggaagtcatccgcgagcacccggtgctgctgaaccgcgcgccgacgctccaccgc
ctcggcatccaggcgttcgagccgacgctcgtcgaaggccgcgcgatcaagctgcacccg
ctcgtctgtacggcgtacaacgccgacttcgacggcgaccagatggccgtgcacgtgccg
ctctcggctgaagcgcaggcggaggcgcgcctgctcatgctcgcttcgggcaacatcctg
aacccgaaggacggcaagccggtcgttacgccttcgcaggacatggtcctcggcagctac
tatctgacgatggacaatcccgaggcgaagggcacgggcatgatgttcgccacggtgaac
gaagcgatctccgcgtaccaccgcgacatcgtgtcgcttcacgcgcggatcgtcatcccg
gcgcgcgcgctgaacaagaagatgttcacggaagagcaggagcgctcgctcatcgtgacg
acggtcgggaaactgattttcaacgagattttcccggacacgttcccgtacatcaacgaa
gcgacgaaggacaacctgctcaagggcacgccggaacgctggttcgtcaaggagaagggc
gcggacgtgaacgcgtacatcgcccagctcccgatcgccagcgcggtgggcaaggaatat
ctcggtcagatcatcgcggaatgcttccgcctgtaccagacgacgacaacgtcgatcatt
ctcgacaagatcaagcagctcggcttcacgtactcgacgcgggccggcatcacgatcgcg
atttcggacgttgtcgtgccggatgcgaagaaggagattctcgccgagtccgaggagaag
gtcagggtcgtcacgaaccagtaccgccgcggcctcatcacggacgaggagcggtacgac
cgcgtcatcgagatctggggccagacgaaggaccggatcacggacgtgctcatgaaatcg
atggaccgctacaactcgatcatgctcatggtcgattcgaaggcgcggggcaacaagtcg
cagatcacgcagctcggcggcatgcgcggcctgatggcgacgccgtccggccggatcttc
gagctcccgatcaaatcgaacttccgcgaagggctgacggtcctcgagtacttcatctcg
acgcacggcgcgcggaaaggtctcgccgacacggcgctccggaccgcggactcgggttat
ctgacccgccgtctcgtcgacgtcgcgcaggacgtcatcgtgcgcgaagaagactgcggc
acggataaaggcatcaccgtcacgaagatccacgacggcaaggaagtcatcgaggatctg
tacgaccggatcgaaggccgctacacggcggcggcggtgcgccatccggagacgggcgag
atcatcgtcggcaagggcgaaatgatcgatgccgagatcgcggagaagatcatcgccgcc
ggcatcgagaagctggagatccgctccgtgctcagctgccgcgcccgccacggcgtctgc
aagatctgctacggccggaacctggcgaccggcaagcatgtcgagatcggcgaagcggtc
ggcatcatcgcggcccagtcgatcggcgagccgggtacgcagcttacgatgcggacgttc
cacacgggcggcgtcgccggcgacgacatcacgcaaggtctgccgcggatccaggagctg
ttcgaagcccggaatccgaaaggccaggcgacgatctccgagatcgacggcgtcgtcaag
gatatccgcgacgcgaaagaccggcgcgagatcgaagtcgaaggcgaagcggagacgaag
gtttactcggtcagctacggttcgcgcatccgcgtgaacatcggcgaccgcgtcgaagcg
ggcgacgagctgacggacggttcgatcgacccgaaggagatgctccggatcaagggtatc
cgcggcgtgcagaactacatcctgcaggaagtgcagcgcgtctaccggaaccagggcgtc
gagatcaacgacaagcatatcgaggtcatgatcaagcagatgctccggaaaatccggatc
gtcgatgcgggtgacacgcagctcctgccgggttcttacgtcgacatccacgagtacgag
gcggcgaaccgcgaagcgattctcgcgggcaaggagccggccgtcgcgaagccggtgctg
ctcggcatcacgaaggcgtcgctcgagacggactccttcctgtccgccgcatcgttccag
gagacgacgcgcgtgctcacggacgccgcgatcaagggcaaggtcgaccagctgctcggc
ctgaaggagaacgtcattatcggcaagctgattccggcgggcacgggcatggcccattac
cggaacattcgcttcgccggtctggaagaagacgagcagcaatcggaagaagtgcttgaa
ggcgtagcggtcgaatcctga
DBGET
integrated database retrieval system
