Thermaerobacter composti: Q5761_02270
Help
Entry
Q5761_02270 CDS
T09555
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tcp
Thermaerobacter composti
Brite
KEGG Orthology (KO) [BR:
tcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tcp03009
]
Q5761_02270 (rlmD)
Enzymes [BR:
tcp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Q5761_02270 (rlmD)
Ribosome biogenesis [BR:
tcp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Q5761_02270 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAM
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
WPD19517
LinkDB
All DBs
Position
552728..554410
Genome browser
AA seq
560 aa
AA seq
DB search
MARQRTQPAPLEPGQVVELEPHGVAAGGDAVARYDGMVVFVPWVAPGDRVRARVTEVKRR
FARAQPVAVVAPGPHRVEPRCPFFARCGGCRLQHLAYPQQLAWKRQMVIDALERIARIPS
PPVAEAVGMDPPWHYRNKAAIPVRRLPSGRVAMGFFAAGTHQVVDMGWTGCAIQHPVIDQ
VIAALRRWLEEDPDGRATSTYDEARHEGLLRHLVVRVGLRSGEALAGLVVNGDGLPGEDR
LARYLRREVPALVGVVKNVNRRPGNTILGPETHPLDGRPWIVDRLGGLRFRISLTSFYQV
NPIQAERLYRLALDHALGEPAPGARDGDFWLIDAYAGIGTLALLAAARLRAAAARHRPGA
GRWRVTAIEVVPEAVADARINAALNGLAGVEFLTGSVEEVLPRLAAAFRRGEGGQGRPPA
AEAATGPDDDPPVPAAGDDRRRPDVIILDPPRKGCDPAALAACLELAPRRIVYVSCNPVT
LARDLAVLCATGSPAAPPLPAAVAGSGTGRPGAARSGHLRSRYRLVSVRPVDMFPHTAHV
ECLALLQRDEPAPPTGRTGE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcccgccaacggacccagccagcgcccctcgagcccggccaagtggtggagctcgaa
ccccacggcgtcgccgccggcggcgacgccgtggcccggtacgacggcatggtggtcttc
gttccttgggtggcgcccggcgaccgcgtgcgcgcccgcgtgacggaggtcaaacggcgg
ttcgcgcgggcccagcccgtggcggtggtggcgcccgggccccaccgcgtcgaaccgcgg
tgtcccttcttcgcccgctgcggcggttgtcggctgcagcacctcgcctatccccagcag
ctggcgtggaagcgccagatggtgatcgacgccctggagcgcatcgcccggatcccctcg
ccaccggtggcggaggcggtggggatggacccgccctggcactaccgcaacaaggccgcc
atccccgtgcgacggctcccgtccggccgggtggccatgggcttcttcgcagccgggacc
caccaggtggtcgacatggggtggacgggctgcgccatccagcacccggtgatcgaccag
gtcatcgccgccctccggcgctggttggaggaggaccccgacggccgggccacctcgacc
tatgacgaggcgcgccatgaggggctgctgcggcacctggtggtccgagtgggcctgcgc
agcggggaggcgctggccggcctggtggtcaacggcgacggcctgccgggcgaggaccgg
ctggctcgctacctgcggcgggaggtccccgccctggtcggggtggtgaagaacgtgaac
cgccgcccgggcaacacgatcctcggcccggagacgcaccccctcgacggtcggccctgg
atcgtcgaccggctgggcggcctgcgctttcgcatcagcttgacgtcgttctaccaggtg
aacccgatccaggccgagcgcctctatcgcctggccctggaccacgccctgggcgagccg
gcgccgggcgccagggacggcgacttctggctcatcgacgcgtacgccgggatcggcacc
ctggccttgctggcggcggcccgcctgcgcgctgccgcggcccgccaccggccgggcgcc
ggccggtggcgggtgaccgccatcgaggtggtgccggaggccgtcgccgacgcccggatc
aacgcggccctcaacggcctcgcaggggtggagttcctcacgggcagcgtggaggaggtc
ctgccgcggctggccgcggccttccgccgcggggaaggggggcagggccgtcctcccgcg
gcggaggcggccaccgggcccgacgacgaccctcccgtccccgctgccggggacgaccgg
cgccgtccagacgtgatcatcctggatccgccgcgcaaggggtgcgatcccgccgccctc
gcggcatgcctcgagctggcgccgcgtcggatcgtctacgtctcctgcaatcccgtcacc
ctggcccgggacctggccgtgctctgcgccaccggatcgccggccgcgccgcccctgccc
gcggccgttgccggttcggggacggggaggcctggcgccgcccgcagcgggcacctgcgg
tcccgctaccgactggtgtcggttcgtccggtggacatgttcccgcacacggcccacgtc
gaatgcttggccctcctccaacgggacgaaccggctcctcccacgggacgaaccggcgag
tga
DBGET
integrated database retrieval system
