Thermaerobacter composti: Q5761_11035
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Entry
Q5761_11035 CDS
T09555
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tcp
Thermaerobacter composti
Pathway
tcp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tcp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q5761_11035 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcp03021
]
Q5761_11035 (rpoD)
Transcription machinery [BR:
tcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q5761_11035 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
V-SNARE
Motif
Other DBs
NCBI-ProteinID:
WPD18879
UniProt:
A0ABZ0QQB5
LinkDB
All DBs
Position
complement(2716094..2717395)
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AA seq
433 aa
AA seq
DB search
MDASEVKNPLLEIDEVKRLVDRGREQGGVLSEDEVSDALQAVELDPDQVDEVYQLLEDMG
IEVETASRRSRGGARNNRANRHHRARSSSRAAKDVEGVVDEVSLDGVGDLDRSGDLDGDA
VEGAAEGRDREAGDGTDVDQLGEPVDDDDDDLSMPDGVALDDPVRMYLKEIGRIPLLTPE
QEIELAKRIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKF
DYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPT
PEEIAKEMGIEPEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLL
LREQLEDVLHTLTDREQKVLRLRFGLDDGRQRTLEEVGQVFGVTRERIRQIEAKALRKLR
HPSRSKKLKDFLE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggacgccagcgaggtcaagaacccgctgctggagatcgatgaggtcaagcggctggtc
gaccgggggcgcgagcagggcggcgtgctgtccgaggacgaggtcagcgacgccctgcag
gccgtggagctcgatccggaccaggtggacgaggtctaccagctcctggaggacatgggc
atcgaggtggagacggcgtcccggcggtcgcggggcggcgctcgcaacaaccgggccaac
cgtcatcaccgggcgcggagctcgagccgtgcggcgaaagacgtcgaaggcgtcgtcgac
gaggtctccctggacggcgtgggcgacctcgaccggtccggggatctggacggcgacgcg
gtggagggagccgccgagggccgcgaccgggaggccggcgacggcaccgacgtcgaccag
ctcggcgagccggtcgacgatgatgacgatgacctgtccatgcccgacggcgtcgccctg
gacgacccggtgcgcatgtacctcaaggagatcgggcgcatccccctcttgacgccggag
caggagatcgagctggccaagcggatcgagcagggcgacgaggaggccaagcgcaagctg
atccaggccaacctgcgcctggtggtcagcatcgccaagcgttacgtggggcgcggcatg
ctgttcctggacctgatccaggagggcaacctgggcctgatcaaggcggcggagaagttc
gactaccgcaagggcttcaagttcagcacttatgccacgtggtggatccgccaggccatc
acgcgcgccatcgcggatcaggccaggaccatccgcatccccgtgcacatggtggagacc
atcaacaagctcatccgcgtccagcgccagctggtgcaggagctcgggcgggagccgacg
ccggaggagatcgccaaggagatgggcatcgagcccgagaaggtccgggagatcatgaag
atcgcccaggagccggtgtccctggagacgcccatcggcgaggaggaggacagccacctg
ggcgacttcatcgaggacgaggacgccctggcgccggcggaggcggcctcccagctcctg
ctgcgcgagcagctggaggacgtgctccacaccctgacggatcgcgagcagaaggtgctg
cggctgcgcttcggcctggatgacgggcgccagcggacgctggaagaggtgggccaggtc
ttcggcgtgacccgcgagcggatccgccagatcgaggccaaggcgctgcgcaagctgcgg
cacccgtcgcggagcaagaagctcaaggacttcctggagtga
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