Thermaerobacter composti: Q5761_11980
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Entry
Q5761_11980 CDS
T09555
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tcp
Thermaerobacter composti
Pathway
tcp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q5761_11980 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcp03021
]
Q5761_11980 (rpoB)
03400 DNA repair and recombination proteins [BR:
tcp03400
]
Q5761_11980 (rpoB)
Enzymes [BR:
tcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q5761_11980 (rpoB)
Transcription machinery [BR:
tcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q5761_11980 (rpoB)
DNA repair and recombination proteins [BR:
tcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q5761_11980 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WPD19050
UniProt:
A0ABZ0QNI6
LinkDB
All DBs
Position
complement(2918336..2922046)
Genome browser
AA seq
1236 aa
AA seq
DB search
MPHVVKSGKRERLSFGRIHEVLDLPNLIEVQLNSYRWFLNEGLRETFQDISPIQDFTGNL
VLEFVDYSLGEPKYSVQECKDRDVTYAAPLRVRVRLINKETGEVKEQEVFMGDFPLMTEH
GTFVINGAERVVVSQLVRSPGVYYSVDYDANGNPLYSATVIPNRGAWLEFESDATGVVYV
RVDRTRKQPATVLLRALGYQTDAELLELLGDTEHVRATLDKDNTDSQAEALMEIYKRLRP
GEPPTDESARQLLENLFFDPKRYDLAAVGRYKLNKKLSLRARLIGLYAAEDVVHPETGER
LVEAGQRFDRQLAQRVQAAGVRRVRVRTPDDREVVVLGNGQPDTGVRTLTREDVAAIVNY
AFGLLVGVGTTDDIDHLGNRRLRSVGELLQNQFRIGLARMERVIKERMSIQDADAITPQA
LINIRPVVAAVKEFFGSSQLSQFMDQTNPLTELTHKRRLSALGPGGLSRERAGFDVRDVH
HSHYGRMCPIETPEGPNIGLIGAMATYARVNEYGFIETPYRRVEKGRVTDDVVYLTADEE
DECVIAQANAELDENGYFKEKRVAVRFRDEVRLAAPEEIDYMDVSPKQVFSIATALIPFL
EHDDANRALMGANMQRQAVPLIRTEAPLVGTGIEYRTAVDSGVVITARRAGTVRRVTARE
IVIETDDGQRDTYHLMKFERSNQGTCFNQRPLVRKGQRVEQGEVIADGPSTDQGELALGR
NVLVAFMPWEGYNYEDAILISERLVKDDVFTSIHIEEYECEARDTKLGPEEITRDIPNVG
EDQLRDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSL
RVPHGESGIVVDVKVFSRENGDELAPGVNQLVQVYVAQKRKISEGDKMAGRHGNKGVIAR
ILPEEDMPFLPDGTPVDIVLNPLGVPSRMNIGQILECHLGWAAKALGLWVATPVFDGTDE
ESIRELLRKAGLPESGKTVLYDGRTGEPFDNEVTVGYVYMLKLAHLVDDKIHARSTGPYS
LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGE
NVPEPGVPESFKVLIKEMQSLGLDVKILTEDNREVELREDEEAREGAELDLDLGELARAG
ARARAGRRAAEAGSSDEDHGQADYGDGYEDEDADMEADEADETDEEGDWGDNPAAYDDSD
LEAGFDLDEPADDLDADADDEADEDGDDVRASGGGD
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacgtggtcaagagcgggaagcgggagcggctgagtttcgggcgcatccacgag
gtcctggacctgcccaacctgatcgaggtgcagctcaactcgtaccggtggttcctcaac
gaggggctgagggagaccttccaggacatctcgccgatccaggacttcaccgggaacctg
gtgctggagttcgtggactactcgttgggggagcccaagtactcggtccaggagtgcaag
gatcgcgacgtgacctacgcggcgcccctgcgcgtgcgggtgcgcctgatcaacaaggag
accggcgaggtcaaggagcaggaggtcttcatgggcgacttcccgctgatgacggagcac
ggcaccttcgtcatcaacggggcggagcgcgtcgtggtcagccagctggtccggtcgccc
ggcgtgtactacagcgtggactacgacgccaacggcaacccgctctactcggccacggtg
atccccaaccgcggcgcctggctggagttcgagtccgacgccacgggcgtcgtctacgtg
cgcgtggaccgcacccgcaagcagccggccaccgtgctgctgcgcgccctgggctaccag
accgacgccgagctgctggagctcctgggtgacaccgagcacgtgcgcgccaccctggac
aaggacaacaccgactcccaggccgaggccctgatggagatctacaagcggctgcgcccc
ggggagccgcccacggacgagagcgcccgccagctgctggagaacctgttcttcgacccc
aagcggtacgacctggccgccgtcgggcggtacaagctcaacaagaagctcagcctgcgg
gcgcgcctcatcggcctctacgccgccgaggacgtggtccaccccgagaccggcgagcgc
ctggtcgaggcgggccagcgcttcgaccggcagctggcccagcgggtccaggcggccggc
gtgcgccgggtgcgggtgcggacgccggacgaccgcgaggtggtggtgctgggcaacggc
cagcccgacaccggtgtgcgcaccctgacccgcgaggacgtggccgccatcgtcaactac
gccttcggcctcctggtcggcgtcgggaccaccgacgacatcgaccacctgggcaatcgt
cgcctgcgctcggtgggcgagctcctgcagaaccagttccgcatcggcctggcccgcatg
gagcgggtgatcaaggagcggatgagcatccaggacgccgatgccatcacgccccaggcc
ctgatcaacatccggcccgtggtggcggcggtcaaggagttcttcggctccagccagctc
agccagttcatggaccagacgaacccgctcaccgagctgacccacaagcggcgcctctcg
gccctgggcccgggcgggctcagccgggagcgggccgggttcgacgtccgcgacgtgcac
cactcccactacggccgcatgtgcccgatcgagacgccggaaggtccaaacatcggcttg
attggcgccatggcgacctatgcccgggtcaacgagtacggcttcatcgagacgccgtac
cggagggtggaaaagggccgggtgaccgacgacgtggtctacctcacggccgatgaggag
gacgagtgcgtcatcgcccaggccaacgccgagctggatgagaacgggtacttcaaggag
aagcgggtggccgtgcgcttccgcgacgaggtgcgcctggccgcgcccgaagagatcgac
tacatggacgtctcgcccaagcaggtgttctccatcgccacggccctgatcccgttcctc
gagcacgacgacgccaaccgcgcgctgatgggggccaacatgcagcgccaggcggtgccg
ctgatccgcacggaggcgccgttggtgggcacggggatcgagtaccgcaccgccgtcgac
tcgggggtggtgatcaccgcccggcgggcgggcaccgtgcgccgcgtcaccgcgcgggag
atcgtcatcgagaccgatgacggccagcgcgacacctaccacctgatgaagttcgagcgg
tccaaccagggcacgtgcttcaaccagcggccgctggtgcgcaagggccagcgggtggag
cagggcgaggtcatcgccgacggcccctccacggaccaaggcgagctggccctggggcgc
aacgtgctggtcgccttcatgccctgggagggctacaactacgaggacgccatcctgatc
agcgagcggctggtcaaggatgacgtcttcacctcgatccacatcgaggagtacgagtgc
gaggcccgcgacaccaagctcgggccggaggagatcacccgcgacatccccaacgtgggc
gaggaccagctgcgggacctggacgaacgcggcatcatccgcatcggggcggaggtgcgc
gccggggacatcctggtcggcaaggtgacgcccaagggcgagacggagctcaccgccgag
gagcggctgctgcgcgccatcttcggcgagaaggcgcgggaggtgcgggacacctcattg
cgcgtgccccacggcgagagcggcatcgtcgtcgacgtcaaggtcttctcccgggagaac
ggcgacgagctggcgccgggcgtcaaccagctggtccaggtctacgtggcccagaagcgc
aagatctccgagggcgacaagatggccggccgccacggcaacaagggcgtcatcgcccgc
atcctgccggaggaggacatgcccttcctccccgacggcacgccggtggacatcgtgctc
aacccgctgggtgtgccctcgcggatgaacatcggccagatcctggagtgccacctgggc
tgggcggccaaggccctgggcctctgggtggcgacgccggtcttcgacggcaccgacgag
gagagcatccgcgagctcttgcgcaaggcgggcctgcccgagagcggcaagaccgtgctc
tatgacggccgcacgggcgagcccttcgacaacgaggtcacggtgggctacgtctacatg
ctgaagctggcccacctggtggacgacaagatccacgcccggtccaccggcccgtactcg
ctggtcacccagcagcccctgggcggcaaggcccagttcggcggccagcgcttcggcgag
atggaggtgtgggccctggaggcctacggcgccgcctacaccctgcaggagctgctgacc
gtcaagtccgacgacgtggtgggccgcgtgaagacctacgaggccatcgtcaagggcgag
aacgtgcccgagccgggcgtgcccgagtccttcaaggtgctgatcaaggagatgcagagc
ctcgggctcgacgtgaagatcctgaccgaggacaaccgcgaggtcgagctgcgcgaggac
gaggaggcgcgggagggcgccgagctcgacctcgacctgggcgagctggcccgtgccggc
gcccgcgcgcgcgccgggcggcgggcggcggaggccggttcgtccgacgaggaccacggc
caggcggactacggcgatggctacgaggacgaggacgcggacatggaggccgacgaggcc
gacgagaccgacgaggagggcgactggggcgacaaccccgccgcctacgacgacagcgac
ctggaggccgggttcgacctggacgaaccggcggacgacctggatgcggacgccgacgac
gaggcggacgaggacggcgacgacgtgcgggccagcggagggggcgactga
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integrated database retrieval system
