Thermococcus camini: TIRI35C_1128
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Entry
TIRI35C_1128 CDS
T07551
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tcq
Thermococcus camini
Brite
KEGG Orthology (KO) [BR:
tcq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tcq03016
]
TIRI35C_1128 (rtcB)
Enzymes [BR:
tcq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TIRI35C_1128 (rtcB)
Transfer RNA biogenesis [BR:
tcq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TIRI35C_1128 (rtcB)
Prokaryotic type
tRNA splicing ligases
TIRI35C_1128 (rtcB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAD5244282
UniProt:
A0A7G2D784
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All DBs
Position
TIRI35C:complement(1046920..1048359)
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AA seq
479 aa
AA seq
DB search
MVPLKRVDKIRWEIPKYDKRMRVPGRVYADDQLIEKMRGDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLVRTNLREEEVRPRIKELVD
TLFKNVPSGLGSKGRVRLHWSQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGADPD
AVSQKAKQRGAPQLGSLGSGNHFLEVQVVDRVFDEKIAEAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRIMEKANRKYGVPWPDRELVSVPFQTEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFKRKAEDMEMHIVYDVAHNIAKVEEHEVDGKKVKVVVHRKGATRAFPAGHP
DVPRAYRDVGQPVLIPGSMGTASYVLAGAEGSMRETFGSSCHGAGRLMSRHAATRQYRGD
RLRNELLQRGIYVRAASLRVVAEEAPGAYKSVDNVVNVVHQAGIANLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgctgaaaagggtagataagattcgctgggagataccgaagtacgacaagcgc
atgagagttccgggcagggtttacgctgacgaccagctgatagagaagatgcgcggagat
agaacccttgagcaggccgccaacgttgcgatgctcccgggaatatacaagtattccata
gtcatgcccgacggccatcagggctacggcttcccgattggcggtgtcgcggcctttgac
gtcaaagagggcgtgataagccccgggggcgtcggatacgatattaattgcggcgtcagg
ttagttagaacaaatttacgagaagaagaagtaagaccccgcatcaaggagctcgtggac
acgctcttcaagaacgttccgagcggtcttggaagcaagggccgtgtaaggctccactgg
agccagctggacgatgttctcgctgacggtgccaagtgggcagttgacaacggctacggc
tggaaagaagatttagagcacctggaggaaggcggaaggatggaaggggccgatccagat
gccgtcagtcagaaggcgaagcagagaggcgctccacagctcggttccctcggctcagga
aaccacttcctcgaggttcaggtggttgatagggtctttgacgagaagatagcggaagct
tacggcctctttgagggacaggtcgttgtgatggttcacacaggttcgcgcggtttgggc
caccaggtggcgagcgactacctcaggataatggagaaggccaacagaaagtacggcgtg
ccgtggcctgaccgtgagctcgtcagcgtccccttccagacggaggaggggcagaggtat
ttcagcgcgatgaaggcagctgcaaacttcgcctgggccaaccggcagatgataacccac
tgggtcagggagagcttcgaggaggtcttcaagagaaaagcagaagacatggagatgcat
atagtctacgacgtggctcacaacatagcgaaggtcgaggagcacgaggtcgatgggaag
aaagtcaaggtggtcgtccacaggaaaggtgccacgagggccttccctgccggccacccc
gacgtgccgagggcctaccgcgatgttggccagcccgtactcattccaggttcgatggga
accgcgagctacgtcctggccggagccgagggctcgatgagagaaacattcggtagctcc
tgccacggtgccggaaggctgatgagcaggcacgccgcgaccagacagtaccgcggggac
aggctgaggaatgagctcctccagaggggaatctacgtccgcgcggcttcgctgagggtc
gttgccgaggaggcacctggagcttacaagagcgttgacaacgtcgtcaacgtcgtccac
caggcaggtatagcgaacctcgtggcgagaatgcgcccgatgggcgtcgccaagggctga
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