Thermococcus camini: TIRI35C_1526
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Entry
TIRI35C_1526 CDS
T07551
Name
(GenBank) putative RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tcq
Thermococcus camini
Pathway
tcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TIRI35C_1526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcq03019
]
TIRI35C_1526
03009 Ribosome biogenesis [BR:
tcq03009
]
TIRI35C_1526
Enzymes [BR:
tcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TIRI35C_1526
Messenger RNA biogenesis [BR:
tcq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TIRI35C_1526
Ribosome biogenesis [BR:
tcq03009
]
Prokaryotic type
rRNA helicases
TIRI35C_1526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
DUF2278
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAD5244680
UniProt:
A0A7G2D9T0
LinkDB
All DBs
Position
TIRI35C:complement(1416906..1418165)
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AA seq
419 aa
AA seq
DB search
MSFESLGLSEATLVAVRQKGFSSPTDIQREVIPRLLSGDVDIIGQSQTGTGKTAAFALPI
IEAIDPKVKAVQAIILTPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRALERG
THVVVGTPGRVLDHIRRGTLDLSSVKFFILDEADRMLDMGFIDDIEAIFRETPRKKRVLM
FSATMPLEIKRLARRYMGDYEVVSVSSDELVPEMVDQEYIEVVPARKLTMLRKILDGAGD
FYGIVFCATKRETRELSEKLRRAGYSAEALNGDMSQAARERTFWRFKTKKTRVLVATDVA
ARGLDVQDINYVVNYSLPMTAEDYVHRIGRTGRMGKKGRAVTFIMPGEFRRLRYIAQTAG
VEIRKSELSEEIPREYRERYERENQRSYSRNPRRGNGGKRGRRNYSGGYSRTNGSRGKW
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaagcttaggcttatcagaggccacgttagtggctgtcaggcagaagggc
ttctcaagtccgacggatattcagagggaggtaatcccgcgccttctatcgggcgacgtc
gatataatcggccagtcccagaccggaacgggaaagactgccgcctttgcgcttccaata
atcgaggccatcgatccgaaggtgaaggcggttcaggcgataatactgacgcccacgagg
gagcttgcccttcaggtcgcggacgagataaagagcctccgcgggaggaagagggtgtac
gtttacgccgtttacggcggccagccgatagggcctcagataagggcacttgagcggggg
acccatgttgtagtcggaacccctggaagggttctcgaccacataaggcgcggaaccctc
gacctgagctccgtaaagttcttcatcctcgatgaggccgacaggatgctcgacatggga
ttcatagacgacatagaggcgattttcagggagacaccgagaaagaagcgtgtgctgatg
ttctccgccacgatgccactggagataaagaggctcgcgaggcgctacatgggtgactac
gaggtggtaagcgtcagcagcgacgagctcgtccctgagatggtggatcaggagtacata
gaggtcgtcccggcgaggaagctcacgatgctcaggaagatactcgatggcgccggggac
ttctacggcatagtcttctgcgccaccaagagggaaaccagggagctcagtgagaagctc
aggagggctggctacagcgccgaggctttaaacggggatatgagccaggccgcgcgcgag
agaaccttctggcgcttcaagaccaaaaaaaccagggttctcgttgcgacggacgtcgcc
gccaggggcctcgatgtgcaggacataaactacgtcgtgaactactccctgccaatgacg
gccgaggactacgtccacaggataggcagaactggcaggatgggcaagaaaggaagggcg
gtgaccttcataatgcctggcgagttcaggaggctccgctacatcgcccagactgcgggc
gttgagatacgcaagtccgagctgagcgaggagattccacgcgagtaccgcgagaggtat
gagagggaaaaccagaggagctactcccggaacccaagacgcggtaacggcggaaaacgg
gggaggagaaactactcgggaggctattcgagaaccaacggctcccgaggaaagtggtga
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