Trypanosoma cruzi: 507681.220
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Entry
507681.220 CDS
T01012
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase, putative
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tcr
Trypanosoma cruzi
Pathway
tcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
507681.220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcr03041
]
507681.220
Enzymes [BR:
tcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
507681.220
Spliceosome [BR:
tcr03041
]
Complex C
Other components
Step II factors
507681.220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
GRP
SRP54
AAA_19
ResIII
nSTAND3
Flavi_DEAD
AAA_7
Motif
Other DBs
NCBI-GeneID:
3550865
NCBI-ProteinID:
XP_818596
UniProt:
Q4DW32
LinkDB
All DBs
AA seq
1055 aa
AA seq
DB search
MQEEVPFLWKLQLIYSRNELYRQLEHLLGRPESVEQAEGYYDDVEELVGLFLREGGNAGG
EESLLAALNSAINAAGDDEPPIPLEQLRGLVRLMQTNLRGVDWPKCLEAGALAIAEKERS
EAEAALRLKLLQQEEEEAAQRDERGRRALESLATDAAERRAAMKVRAEEKMQLAQLVRSG
LLDESELLQLRTDDEEVEQVELNEEEPRFLRGLVRHRPINYRALLPSEQLMRASTPAQRE
AIIARRAMQQTTADEIETNSMKRAAISQQIRNKDRQILRAKERRLQRLTEHARCGVDDGF
ARRNRGANDGEGEEEEEGGWEAKGNGQYNGNADDNGILGHELLERPEDRAGGFRSSRDLP
SRLPPWMKHSFGEKPRFGPTFTSQSITEQRQSLPIYAYRERFLEHVDKHIVTVLVGETGS
GKTTQIPQYLAEHGYSKRGVVCCTQPRRVAAETLAIRVAEEYGCRLGEEVGYTVRFRDVT
SSLTKIKYMTDGMLLREALLDDTFQRYSVIILDEAHERSVNTDLLFAIVRNATHKRPTLK
VIVTSATLEREKFCNYFNVADVFFIEGRTFPVEVNFLREPTEDYLDCALRTVMKLHLQEP
PGDVLVFLTGQEEIELGGERLFRWMEKLREYSERPVPDMLVLPLTASLPQEVQSRVFEPT
PPRCRKVVLATNVAETSITITNLYFVVDSGFCKQNVFDPKTGMEQLKIVPISQAQAQQRA
GRAGRIGPGKCFRMYTELQFQMDMEPATVPDIQRSNLFHVVLQLKAMGINDLFALDLMDP
PPRETLVSALQKLRYLEALDDDGLLTPLGGRMAQLPIDPSQSKTLLTAVDMGCCEPVLTI
VSMLAVQKRGVFYRPRDQHEASDAAKRQFHQPEGDQITLLAVYDAWVANGLSEEWCKRNF
LKHRILMEARDTREQLSDMLRKRHASIPHHNDDALTEVRRAITAGYFFNVAKRITDVAYA
TLAERREVYVHPSSCLRDAPPKYVLYNELQLTNREYMRELLVIEPQWLVELAPAFYSRPR
KGKLTKEQRAERLNPILRAWENGSSWRISKLRRRK
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaggaagttcccttcctgtggaagctgcagctgatatacagtaggaatgaattg
taccgccagctggagcacctgctcgggcgaccggaaagtgtggagcaggcggaggggtac
tacgacgatgtagaggagttggtggggctctttttgcgcgagggaggcaacgcgggcggg
gaggagtcgctgctcgcggcgcttaacagcgccattaatgctgctggggacgatgagccc
cccattccgttggagcagcttcgcggtcttgtgcgtcttatgcagacgaacctgcgtggc
gtcgactggccgaagtgccttgaggccggtgcgctcgcgattgcggagaaggagcggagc
gaagcggaggcggcgttgcggctgaagttgttgcagcaggaggaggaagaagcggcgcag
cgggatgagcggggacggagggcgctcgagagccttgcaaccgacgctgcggagcgccgt
gcggcgatgaaagtgcgggcggaggaaaagatgcagctggcgcaactggtgcgcagcggt
ctgcttgacgagtcggagttgctgcagctacgtaccgatgacgaggaggtggagcaagtg
gagctgaatgaggaggagccgcggtttctgcgcgggttggtgcgacatcgacccatcaac
taccgtgcactgctgccgtcggagcagttgatgcgggcgagtacgccagcgcaacgggag
gcgattattgcacgacgggccatgcagcagacgaccgccgatgaaattgagacgaacagc
atgaagcgtgcggcgatttcacagcagatacgcaacaaagaccggcagattctccgagcg
aaggagcggcgtctgcaaagactgaccgaacacgcacgctgcggcgtggacgacggcttt
gcgcgccgcaacagaggcgccaacgacggggaaggggaggaggaggaggagggcgggtgg
gaggccaaaggaaacggccagtacaatggcaatgcggatgacaacggcatactcggccac
gagctgctggagcgtccggaggatcgtgcgggtggttttcgctcctcacgggatttgcca
tcacggttgccgccgtggatgaagcacagctttggagagaaaccacgatttggacccacg
ttcacgtcgcagagcatcacggagcagcgccagtcgctgcccatttacgcctatcgtgaa
cggtttctcgagcatgtggacaaacacattgtgactgtgttggtgggggagaccggtagt
ggaaaaacgacacagatcccgcagtatcttgcagagcacggctacagcaaacgtggtgtt
gtctgttgcacacaaccccgccgtgtggcggcagagacgcttgccattcgtgtggcggaa
gagtacggctgccgcttgggtgaggaggtggggtacacggtacgcttccgcgatgtcacg
tcctcactgacgaagattaagtacatgacggatggcatgctgctacgtgaggctcttctt
gacgacacatttcagcgttacagcgtcatcattcttgatgaggcacatgagcgttcagtg
aatacggatttgttgtttgccattgtccgcaatgcaacacacaagcgaccaacactgaag
gtgattgtaacttctgcaacgcttgagagagagaagttttgcaactatttcaatgttgct
gatgtcttttttattgagggccgcacattccccgtagaggtaaacttcctccgggagccg
acggaggactacctggactgcgcactccgcactgtcatgaagttgcatcttcaggagccg
ccgggtgatgtgttggtattcctgacagggcaggaggagattgaattgggcggcgagcgg
ctatttcgatggatggagaagttgcgtgagtacagcgagaggccggtgccggatatgctt
gtgctaccgctcacagcatcgctgccgcaggaggttcagtcacgtgtctttgagcccaca
cccccgcgctgccggaaggttgtgcttgccaccaacgtggctgaaacatccatcactatc
actaacctgtactttgttgttgacagtgggttctgcaagcagaatgtctttgaccccaaa
acaggaatggaacaactgaagattgtccccatttcacaggcgcaggcacaacaacgagcc
gggcgcgcggggcgcattggtcccgggaagtgtttccgtatgtacacagagctacagttc
caaatggacatggagcctgccacggtgccagatatccagcggtctaatctgtttcatgtg
gtactacaactgaaggcaatgggcattaacgatctttttgcacttgatttaatggatcca
ccgccgcgagaaacgttggtgtcggcgttgcagaaactgcgttaccttgaggcgcttgac
gatgatggattattaaccccgctggggggtcgcatggcacagctccctatcgatccctca
cagagcaagacgcttctgacggctgtagacatgggatgctgcgagccagtgctgacgatt
gtgtcgatgcttgctgtgcagaagcgtggggtgttttaccggccacgagaccagcatgag
gcgtccgacgcggcgaagcgacaattccaccaaccagagggggatcagattacactgctg
gcagtttacgatgcgtgggtggcaaatggcctcagcgaggaatggtgtaaacgcaacttt
ttaaagcatcggatattgatggaggcccgtgacacacgtgagcagttaagcgacatgtta
cgcaagcgccacgcatcgattccgcatcacaacgacgacgcgctgaccgaggtgcggcga
gccatcaccgcaggctatttttttaacgtcgccaaacgtatcacggacgttgcatacgct
actctggcggaacggcgtgaggtgtatgtgcatccctcgtcatgcctgcgggatgcaccg
ccgaagtacgttctgtacaacgagttgcagctgacgaatcgagagtacatgcgggagctg
ctggtgattgagccccagtggttggttgagcttgccccggccttctacagtaggccgcga
aagggaaagctgacaaaggaacaacgagcggagcgtctcaacccaattttgcgcgcctgg
gaaaatgggagctcgtggaggatctcaaagctgcgtcgccgaaagtga
DBGET
integrated database retrieval system
