Trypanosoma cruzi: 509011.20
Help
Entry
509011.20 CDS
T01012
Name
(RefSeq) RNA polymerase IIA largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tcr
Trypanosoma cruzi
Pathway
tcr03020
RNA polymerase
tcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
509011.20
09124 Replication and repair
03420 Nucleotide excision repair
509011.20
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcr03021
]
509011.20
03400 DNA repair and recombination proteins [BR:
tcr03400
]
509011.20
Enzymes [BR:
tcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
509011.20
Transcription machinery [BR:
tcr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
509011.20
DNA repair and recombination proteins [BR:
tcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
509011.20
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
PspA_IM30
Motif
Other DBs
NCBI-GeneID:
3543784
NCBI-ProteinID:
XP_812569
UniProt:
Q4DDX5
LinkDB
All DBs
AA seq
1731 aa
AA seq
DB search
MSGGAPLPPSQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMG
TTDFEFACETCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTND
PQVHKKLQHLTGVNRLRQVVKMCGMKCRMSTDATTPEEAVVARGCGATQPRIGRYLGIYP
TLIIKATLEEQDMVWHADTARQVLDRVSDEDARVMGFDALRCHPRDLVLTVLPVPPPQVR
PAISFGSLKSDDELTHQIMSIVKRNNQLRKDKESDVQVAVDRSRALLQEHVAAYFNNASM
YYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFS
IAMTLTFPERVSAVNKKRLTEFVRRPVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDV
VERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHV
PQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVAL
WLDLWQLPVPAVLKPRPLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLC
GPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVADAD
TLRQMNEVLVKTRENVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKAL
SNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGE
TSRGMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDG
TVRNANQELIQFMYGEDGLDGARIEGGQLFPLPFRDNKEMESTYKYEYDETGAFNEKVGG
AYMDPHVKKMLRADPENVRKLQSEFDQLMADRDWARRMMDLEEREKLKLNLPVNIGRLIQ
NARSTMGKRSQVSNLSPVTIIDHVRKLQEDMLKLFPCYHKGVDGRIHNLLSRQRIENALT
LFSVHLRQLLASKRVLREYKLNDKAFEYLLKEIRTKYLQSLVSPGENIGAIAAQSCGEPA
TQMTLNTFHNAGISSKNVTLGVPRLLELLNVSRHQKHASMNVSLYPPWDKKRTAQQAQHL
IEYCTLESVTKRIQFIYDPDPRETVVEADRAILELEWSVMDESDERARLQEVENGSPWIA
RLELDADMFVDKALNMKDVKQAILRVDDGYVIETGMANDTKERTIRMRPKKNDGVDSIPR
LKHAIPELLARVHLRGIPGVRKALLKDRTTFTVDPATGKMTGEKTWLIDTDGTALRRAFI
GIVDEKGNNIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTIL
VDTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVL
GNQARIGTGLFDLVLNMAALQQAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYRAKDHE
TTPFVNDASLFFREGVGGSSSAAPLTASTLYGGMHEASAVHFSQAYPAMGMSDQRVRASS
VSQPYSVMSSASVYNPASMQVPSALPSSVDYSEASSFHIQSSMAMPSVPSSPQFEAPQAF
GGGRFGGLSPAYVPSVMSSVATQPYQCVGDSESQQSASYVPTLSPAYSAYTARRSVVASR
ASASRVDQQSQQQEDDSASYLPKSPGLHGLPPPVGEFSLTEDPEEEEEGHQ
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggggccccactgccaccgtcgcagatggacttacagaaggtcgtggaagtg
cagtttgagatgtttaaggaaaagcagattaaagactacgccgtgtgtctcgtggagcac
gccaagtcgtatgagcgcggccaacctgtgcgtgggggcattaatgatcttcgcatggga
accaccgactttgagtttgcctgcgagacgtgtcaccgaaagcacccggagtgccccggt
cactttggctacattgaccttgcggaacctgtttttaacatcggcgtctttgacatcgtg
ctgcaggtactgaagtgcgtctgcaagtcctgcggcgcactcctcatggacaccaacgac
ccgcaggtgcacaagaagttgcagcacctcaccggcgtgaatcgcctgcgccaagtggta
aagatgtgcggcatgaaatgtcgcatgtcaacggatgccacaacgcccgaggaagcggtt
gtggcgcgcgggtgtggcgcaacgcagcctcgcattggccgctacctcggcatctaccca
acccttatcatcaaggcaacgctggaggagcaggacatggtgtggcacgcggacaccgcg
cgccaagtgctcgaccgtgtctccgacgaggacgcgcgggtgatggggtttgacgcgttg
cgctgtcacccacgcgacctcgtgctgacggtcctgccggtgccaccgccgcaagtgcgg
cccgccatatcgtttggcagcctcaagtcggacgacgagctcacgcatcagattatgtca
attgtgaagcgcaataatcagctgcggaaggacaaggagtctgatgtgcaggtggcagtg
gaccgcagtcgcgcgctgctgcaagagcatgtggccgcgtacttcaacaacgcttccatg
tactacaagccaacgaaggtgaacgacacgaagaagctcaagtcactgacggaacgtctg
aagggaaagtacggccgtctacgcgggaatctgatgggcaagcgcgtggatttttctgcc
cgaactgtcattacaggcgatccgaacattgacgtggatgaagttggtgtgcccttctct
atcgccatgacgcttacctttccggaacgcgtgagcgcggtcaacaagaagcggcttacg
gagtttgtgcgtcggccggtatacccctccgcaaactacattcatcaccccaatgggacc
actaccaaactggcgttgcggcgcgaccgttcgaaagtgacgctcaacattggcgacgtc
gtggagcggcacgtcataaacggcgatgttgtgcttttcaaccggcagcccacactgcac
cgtatgagtatgatgggccaccgtgtgcgggtgttaaattacaacacgtttcgtctgaat
ctctcgtgcacaacgccgtacaatgcggattttgatggtgacgaaatgaatctgcacgtg
ccgcagagtcttctcacgaaggcggagcttattgaaatgatgatggtgccaaagaatttt
gtgtcgcccaacaagtctgctccgtgcatgggcattgtccaggacagtcttctcggcagt
tatcggctcacggacaaggacacgtttcttgacaagtactttgtgcagagtgttgctctc
tggttggacctgtggcagttgcccgtgccggccgtgctaaagccgcgacctctgtggaca
ggaaaacaggtcttttcgctcattcttccagaagtgaaccatccggcgacgccgcaggag
agaccgccgttcccgcacaacgactccagcattatgatacgacgggggcagctgttgtgt
gggcccatcacgaagggcatcgttggcgccgccccgggatctctcattcacgtcattttc
aacgaacgcgggtcggatgaagtggctcgctttatcaacggcgtgcagcgcatcacgaca
tttttcctcatcaattttggtttcagtgtcggtgtgcaggacacggtcgcggatgcggac
acgcttcggcagatgaacgaggtcctggtgaagacgcgtgagaacgtcgaaaagatcggt
gcggcggccaacaaccgcactctcaaccgaaaggctggtatgacgcttttgcagtccttt
gaggcggatgtgaacagcgcgctgaacaagtgccgcgaagaggcggccaaaaaggctttg
agtaacgtgcgccgtacgaacagcttcaaggtgatgattgaggcgggcagtaaagggacg
gatctgaatatctgccagattgctgtttttgtcggccagcagaacgttgccggcagccga
atcccatttggctttcgccgtcgcacactgccacacttcatgttggatgactacggtgaa
acctcgcgaggcatggcaaaccgcgggtacgtggaagggctcaaaccacacgagttcttt
ttccatacgatggcgggtcgagagggacttattgacacggccgtcaagacatctgacaca
gggtacctgcagcgtaaacttatcaaggcactcgaagacgttcacgccgcgtacgatggc
actgtgcgcaacgctaatcaagaactcattcagttcatgtatggcgaggatggcttggac
ggggctcgtattgagggcgggcagctcttccctcttccatttcgtgacaacaaagagatg
gaaagtacatacaagtacgagtacgacgagacaggtgcatttaacgagaaagtgggcggt
gcgtacatggacccgcatgtaaaaaagatgctgcgtgcagatccggagaacgtgcggaaa
ctgcagagtgagtttgatcagcttatggccgaccgtgactgggcacgtcgaatgatggac
ttggaggagcgggagaagttgaagctgaacttacccgtgaacattggccgcctcattcaa
aacgcacggagcaccatggggaagcgtagtcaagtctctaatctcagtcctgtcaccatc
attgaccatgtgcggaagctgcaggaagacatgctcaaattgttcccgtgctaccacaag
ggcgtggacggccgcatccacaacttgcttagccgtcagcgcattgagaatgccttgaca
ctcttcagcgtccacttacggcaactgcttgcctccaagcgggtgctacgggagtataaa
cttaatgataaggcctttgagtatttgttgaaagaaatacgtacaaagtaccttcagtct
ctcgtctcacctggcgaaaacattggggcaattgcggcgcaatcctgcggtgagccagca
acgcagatgacacttaatacatttcacaatgcgggcatttcctccaaaaatgtcacactt
ggcgttccacggctacttgagctccttaatgtgtcgcggcatcagaaacatgcgagcatg
aacgtctccctatacccgccgtgggacaagaagcgtaccgcacagcaggctcaacaccta
attgagtactgtacattggaaagcgtcacaaaacgcatccagtttatttacgatcctgat
ccacgtgagacggttgtggaggcagaccgtgccatcttggagctggagtggagcgtcatg
gatgagagcgacgagcgggcacgactccaggaggtggagaacggctccccatggattgca
agacttgaacttgatgccgacatgtttgtggataaggcacttaatatgaaggacgtcaag
caggcaattttgcgtgtggacgatgggtatgtgatagagacaggtatggcaaacgacaca
aaggagcgcaccatacgtatgcgacccaagaagaatgatggggtggactccattccccgg
ctgaagcatgccattccggagctgcttgcgcgtgtgcatctgcgtggtattcctggcgtg
cggaaggcactgttgaaagacaggacaacgtttacagtggaccccgccacagggaagatg
acaggtgagaagacttggttgattgacacagatgggaccgcgctgcgccgtgccttcatt
ggcattgtggacgagaagggtaataatattattaacgccacccggacaagtagcaacaag
gttcccgaagtctgtagccttcttggcattgaggcggcacgctacaagatgctgcatgag
ttgcgtgaggcttaccttgcctacggtcttaacatcaactaccgtcactacaccatactg
gtggacacgatatgtcagcggggttatctgatggccgtttcacgcgttggtattaatcgc
tcggaaatgtcgggacctctgatgcgctgttcgtttgaggaaactgtgaaagttcttatg
gctgccgcggcttttggtgagcgagatcctgtgcgtggtgtatcagcaaaccttgtgctt
ggtaatcaggctcgtattggcacgggtctctttgatctcgtgttgaatatggcggcgctg
cagcaggcggtgcctcaggaggatgccgtggcgcccggcaaggaagtgaatgtctaccac
ggccttgcctcaacgcagaacctaccgtcatccatgccctaccgcgcaaaggatcatgag
accacaccatttgtaaatgacgcaagccttttcttccgtgagggtgttggcggcagctcc
tccgctgctcctttgacagcatcaacactttatggtggtatgcatgaggcgagtgcggtg
cacttcagtcaggcgtaccctgcgatgggcatgtcggatcagcgagtgcgggcctcaagc
gtctcgcagccatacagcgtcatgtcgtcggcgagcgtatacaaccctgcctctatgcaa
gtgccttcggcgttgcccagcagcgtggactacagcgaggcctcttccttccacattcag
tccagcatggcaatgccgtcggttccctcttcaccgcaatttgaagcgccacaggcattt
ggtggcggtcgattcggcggtctctctccggcatacgtgccctctgttatgtcgagtgtg
gcgacacagccgtatcaatgcgtcggcgactcggaatcccagcagtccgcgtcttatgtg
ccgactctgtcgcccgcctactctgcctacacggcacggcgttccgtggtggcgtcacgt
gccagcgcctctcgtgtcgatcagcagtcgcagcagcaggaggacgactctgcaagttac
ttaccgaagtcgccgggattgcacgggttaccacctccagttggtgagttctctctaaca
gaagatccggaggaggaggaggaagggcaccagtag
DBGET
integrated database retrieval system
