Pseudoduganella chitinolytica: PX653_04145
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Entry
PX653_04145 CDS
T08857
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PX653_04145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_04145
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PX653_04145
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PX653_04145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
AAA_29
DnaJ_CXXCXGXG
AAA_33
AAA_16
AAA_25
RsgA_GTPase
DUF4350
AAA_15
MeaB
Motif
Other DBs
NCBI-ProteinID:
WEF33977
LinkDB
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Position
937616..940177
Genome browser
AA seq
853 aa
AA seq
DB search
MNDKRLPGMVRVRGAREHNLKNVDLDIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYL
ESVSPYARRLFHQMPVPQVDEIDGLPPAVALQQQRGSPTTRSSVGSVTTLSNSLRMLYSR
AGDYPAGQELLYAESFSPNTPEGACPECHGLGRVYEVTEQSMVPDDTLTIRERAVAAWPP
AWHGQNLRDILVTLGYDVDTPWRDLPKKDRDWILYTDETPTVPVYAGLTPEETKRALKRK
DPPSYQGTFTGARKYVLQTFANTESASMKKRVARYMVSNECPVCRGKRLRAESLSVTFAG
HDITGISRLPLARLAQTMRPYADGSAKASAKERAAHPEKLIVTQRIAQDVLARLDVLLDL
GLGYLTLDRSTPTLSPGELQRLRLATQVRSNLFGVVYVLDEPSAGLHPADTVALLRAMDR
LKASGNSLFVVEHALDVIRHADWIVDVGPAAGEGGGAVLYSGEPDGLREVPASQTRRYLF
PQEAPPARAVREPARWLTLQDVTRNNLHRLDAAFPLSVFTTVTGVSGSGKSSLVSQVLVE
LVARALGHDVAAEPEEGEELERTVELPLEGRIVGGLEYVRRMVRVDQKPIGRTPRSNLAT
YTGLFDHVRKLFAATKTAKARRYDAGRFSFNVAKGRCDNCEGEGFVMVELLFLPSVYAPC
PVCAGARYNAKTLEVTYRERNIAEVLGMTVDAAWEFFADEAPLHRALDVLREVGLGYLRL
GQPATELSGGEAQRIKLATELQRASRGDTLYVLDEPTTGLHPADVERLIVQLQKLVDAGN
TVVAVEHDMRVVAASDWVIDIGPGAGEEGGTVVAAGPPAQVARSKESRTAPYLRRFLGGS
GGTERPSRAASQG
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataagcgcctgcccggcatggtccgggtgcgcggtgcgcgcgaacacaacctg
aagaacgtcgacctggacatcccgcgtgatgcgctggtcgtctttaccggcgtgtccggc
tccggcaagtcgtcgctggcgttcggtaccctgtatgcggaggcgcagcggcgctacctg
gaatcggtgtcgccctatgcgcgccgcctgttccaccagatgccggtgccgcaggtggac
gagatcgacggcctgccgcccgcggtggcattgcagcagcagcgcggctcgccgacgacg
cgctcgtcggtcggcagcgtcaccaccttgtcgaactccctgcgcatgctgtactcgcgt
gccggcgactacccggcggggcaggagctgctgtacgcggagtcgttctcgcccaacacg
cccgaaggcgcctgccccgagtgccatggcctgggccgggtgtacgaggtgacggagcag
tcgatggtgccggacgatacgctgacgatccgcgagcgggccgtcgccgcctggccgccc
gcttggcacggccagaacctgcgcgatatcctcgtcaccctgggctacgacgtcgacacc
ccctggcgcgacctgccgaagaaggaccgcgactggatcctgtacacggacgagacgccc
acggtgcctgtctatgccggcctgaccccggaggagaccaagcgggccctgaagcgcaag
gacccgcccagctaccagggcacgttcacgggcgcgcgcaagtacgtgctgcagacgttc
gccaacacggaaagcgcgtcgatgaagaagcgggtggcgcgctacatggtcagcaacgag
tgccccgtctgtcgcggcaagcggctgcgcgcggaatcgctgtcggtcacgtttgccggc
cacgacatcacgggcatctcgcgcctgccgctggcgcgcctggcgcagacgatgcgcccg
tatgcggacggcagcgccaaggccagcgccaaggaacgcgccgcgcacccggaaaaactg
atcgtcacgcagcgcatcgcccaggacgtgctggcccggctggacgtgctgctggacctg
ggcctcggctacctcaccctggaccgcagcacgccgaccctgtcgccgggcgagctgcag
cggctgcgcctggccacgcaggtgcgctcgaacctgttcggcgtcgtctacgtgctggac
gagccgtcggccggcctgcacccggccgacacggtggcgctgctgcgcgcgatggaccgg
ctgaaggcatccggcaattcgctgttcgtcgtcgaacatgcgctggacgtgatccgccac
gccgactggatcgtggacgtgggcccggcggccggcgagggtggcggcgcagtgctgtac
agcggcgagccggacgggctgcgggaggtgccggcctcgcaaacgcggcgctacctgttc
ccgcaagaagcaccgccagcacgcgccgtgcgcgaaccggcacgctggctgacactgcag
gacgtcacgcgcaacaacctgcaccggctcgatgcggcgttcccgcttagcgtcttcacg
acggtgacgggtgtttccggttccggcaagtcgagcctcgtcagccaggtgctggtggag
ctggtggcgcgcgcgctggggcacgacgtggcggccgaaccggaagagggcgaggagctg
gagcgcaccgtcgagctgccgctcgagggccgcattgtcgggggactggagtatgtgcgc
cgcatggtgcgggtggaccagaagccgatcggccgcacgccgcgctcgaacctggccacg
tacacgggcctgttcgaccacgtgcgcaagctgttcgccgcgaccaagacggccaaggca
cgccgctacgatgccggccggttctcgttcaatgtcgccaagggccgctgcgacaactgc
gagggcgaaggtttcgtcatggtcgaactgctgttcctgcccagcgtgtatgcgccatgc
cccgtctgcgcgggcgcccgctacaacgccaagacgctggaggtgacgtaccgcgagcgc
aacatcgccgaggtgctgggcatgacggtggacgccgcctgggaattctttgccgacgaa
gcgccgctgcaccgggcgctcgacgtgctgcgtgaagtgggactgggctacctgcgcctg
gggcagccggccacggagctgtccggcggcgaggcgcagcgcatcaagctggccaccgag
ctgcaacgcgcctcgcgcggcgacacgctgtacgtgctggacgagcccaccacgggcctg
cacccggcggacgtggagcggctgatcgtgcagttgcaaaagctggtcgacgcgggcaac
acggtcgtcgcggtggagcacgacatgcgcgtggtggccgccagcgactgggtcatcgac
atcggcccgggtgccggcgaggagggtggcactgttgtcgcggccgggccgccggcgcag
gtggcgcgcagcaaggagagccggacggcgccttatttgcggcggttcctgggcggctct
ggcggcaccgagcgcccctcacgcgcggcgtcccagggctag
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