Pseudoduganella chitinolytica: PX653_04395
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Entry
PX653_04395 CDS
T08857
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PX653_04395 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_04395 (recD)
Enzymes [BR:
tct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PX653_04395 (recD)
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PX653_04395 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
AAA_11
SH3_13
UvrD_C_2
Viral_helicase1
Helicase_RecD
PhoH
AAA_22
UvrD-helicase
AAA_16
SLFN-g3_helicase
DEAD
AAA_28
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WEF34020
LinkDB
All DBs
Position
998157..1000160
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AA seq
667 aa
AA seq
DB search
MKKNDPQAEAARSVATLAQLDALTEAGKLRRLAGAFARFVATLGHAPAPLLVASALLSEL
EGRGHSCLVLADLAHDPSAQLGWLDGEWAALRALAGPLPKKAADWRNLLQACEQVWPVGD
LDFNQPLVLDGERLYLRRYWRDETMVAASVVRRAATARPVDAAAVRGWLDRLFEPRADAR
PEAGPDWQKIACAVALRSDLAVITGGPGTGKTYTVARLLALLFAMAGAGQAHGLRIALAA
PTGKAAARLKQSIDQALDELADKLGDSLPLRELAARMGAARTLHSLLGARPDTRSFAYHA
GNPLDVDVLIVDEASMVHLEMMASLLAALPAHARLVLLGDKDQLASVEAGAVLGDLCAEA
ESGNYHQATVAYVQAATGETIPADFAARDGGALAQSIVMLRQSRRFGGPIGALALAVNRG
DADAARAVLRAGPAEHGDRVHWIEGATPQDVLALAVDGRPGAPQGYRDYLTLVKEGPDAW
GGDYTGWVRAVLRRFEQFRLLCAVRAGEWGVAGLNEAIEARLDAARLIRRRGEWYVGRPV
MVTRNDYATGVYNGDIGLTLPDPLRPGSLRVWFADGDAIRSVLATRLRDVETAFAMTVHK
SQGSEFTHTAMVLPREINAVLARELVYTGITRAREFFTLVSPNADVLGQAIAERTQRASG
LREALLR
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaacgatccacaggccgaagcggcccgcagcgtcgccaccctggcgcagctg
gacgcgctgacggaggcgggcaagctgcgccggctggccggggcattcgcccgcttcgtc
gccaccctgggccatgcgcccgcgccgctgctggtggccagcgcgctgctgtccgagctg
gaagggcgcggccacagctgcctggtgctggccgacctggcgcacgacccgtccgcgcaa
ctgggctggctcgatggcgagtgggcggcgctgcgcgcgctggccgggccgctgccgaag
aaggcggccgactggcgcaacctgctgcaggcctgcgagcaggtctggcccgtgggcgac
ctcgatttcaaccagccgctggtgctggacggcgaacggctgtacctgcgccgctactgg
cgcgacgagaccatggtggcggcctccgtcgtgcgccgcgcggccacggcgcgcccggtc
gacgcggccgccgtgcggggctggctggaccggctgttcgaaccgcgcgccgatgccagg
cccgaggcgggccccgactggcagaagatcgcctgcgccgtcgccctgcgcagcgacctg
gccgtcatcacgggcggtcccggcaccggcaagacgtacacggtggcgcgcttgctcgcg
ctgctgttcgcgatggcgggagcaggccaggcccacggcctgcgcatcgcgctggcggcg
cccaccggcaaggccgccgcgcgcttgaagcagtcgatcgaccaggcgctggacgagctg
gcagacaagctgggcgacagcctgccgctgcgcgaactggcggcgcgcatgggcgccgcc
cgcaccttgcattcgctgctgggcgcgcggcccgacacgcgcagctttgcctaccacgcc
ggtaatccgctcgacgtggacgtgctgatcgtcgacgaggcgtcgatggtgcacctggag
atgatggcgtcgctgctggcggcgctgcccgcccatgcgcgcctggtcctgctgggcgac
aaggaccagctggcgtcggtggaggcgggcgccgtgctgggcgacctgtgcgccgaggcg
gaaagcggcaactaccaccaggcgacggtggcgtacgtgcaggccgccacgggcgaaacc
atcccggccgatttcgccgcgcgcgacggcggtgcgctggcacaaagcatcgtcatgctg
cgccagagccgccgcttcggcgggccgatcggcgcgctggcgttggccgtcaaccggggc
gacgcggacgccgcgcgcgcggtgctgcgcgccggacctgccgaacacggcgaccgggtg
cactggatcgaaggggccacgccgcaggacgtgctggcgctggcggtcgacggccggccc
ggcgcgccgcagggctaccgcgattacctgaccctggtgaaagaggggccggacgcgtgg
ggcggcgactacacgggctgggtgcgcgcggtgctgcgccgcttcgagcagttccgcctg
ctgtgcgccgtgcgcgcgggcgagtggggcgtggccggcctgaacgaggccatcgaggcg
cggctggatgcggcccggctgatccgccgccgcggtgagtggtacgtgggccgtcccgtg
atggtgacccgcaacgattacgccaccggcgtctacaacggcgacatcggcctgaccttg
ccggacccgctgcgaccgggctccctgcgcgtctggttcgccgacggcgacgcgatccgc
agcgtgctggcgacgcgcctgcgcgacgtcgagacggcgttcgcgatgacggtccacaaa
tcgcaggggtcggagttcacgcacacggcgatggtgctgccgcgcgaaatcaatgccgtg
ctggcgcgcgaactggtctacacgggcatcacgcgggcacgcgagttcttcacgctggtg
tcgcccaacgccgacgtgctgggccaggccattgccgagcgtacgcagcgggccagcggc
ttgcgcgaggctttgctgcggtag
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