Pseudoduganella chitinolytica: PX653_06605
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Entry
PX653_06605 CDS
T08857
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tct
Pseudoduganella chitinolytica
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tct03032
]
PX653_06605
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_06605
Enzymes [BR:
tct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PX653_06605
DNA replication proteins [BR:
tct03032
]
Prokaryotic type
DNA Topoisomerases
PX653_06605
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PX653_06605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Creatininase
Ribosomal_L40e
Motif
Other DBs
NCBI-ProteinID:
WEF34436
LinkDB
All DBs
Position
1521517..1522737
Genome browser
AA seq
406 aa
AA seq
DB search
MKPEESTAPNANLAADAPAAARAAGLRYVTDARPGLGRIARDGGGFRYVDADGKPVDDEA
TLARIKSLAIPPAWTDVWICAQANGHLQATGRDARGRKQYRYHPRWRSVRDDVKYERMIA
FGRALPGIRRAVDAALGLPGLPREKVLATIVYLLEATMMRIGNEEYAKENKSFGLTTLRN
RHVRVDGKEVEFHFRGKSGVWHDVKVADRRLARIIGRIRDLPGQELFQYVDDDGNRHAID
SSDVNDYLRTITGEDYTAKDFRTWSGTVLAALALQEFEKFDSETQAKKNVVRAIESVAKK
LGNTPSVCRKCYVHPAVVEAYMDGAELAALRTRAEEELTQDLHALQPEEAAVLALLQQRL
EREAEQAAAKGKQKSVRVAAPARARTKGAAGSGARAGARKGATAPA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagaagaaagcaccgcgcccaacgccaacctggccgccgacgcgccggccgcc
gcccgtgccgccgggctgcgctacgtgaccgacgcccgtcccgggctgggccgcatcgcc
cgcgatggcggcggcttccgctatgtggacgcggacggcaagccggtggacgacgaagcg
acgctggcccgcatcaagtcgctggcgatcccgccggcctggacggacgtatggatctgc
gcccaggccaacggccacctgcaggcgacggggcgcgacgcgcgcgggcgcaagcagtac
cgttaccatccgcgctggcgcagcgtgcgcgacgacgtcaagtacgagcgcatgatcgcg
ttcggccgcgccttgcccggcatccggcgcgccgtggacgcggcgctggggctgccgggc
ctgccgcgcgagaaagtcctggcaaccatcgtctacctgctggaagcgacgatgatgcgg
atcggtaacgaggaatacgccaaggagaacaagtcgttcggcctgaccacgctgcgcaac
cgccacgtgcgggtggacggcaaggaagtcgagttccacttccgcggcaagagcggcgtg
tggcacgacgtcaaggtggcggaccggcgcctggcccgcatcatcggccgtatccgcgac
ctgccaggccaggaactgttccagtacgtggacgacgacggcaaccgccacgcgatcgat
tccagcgacgtcaacgactacctgcgcaccatcacgggcgaggactacacggccaaggat
ttccgcacatggtccggcacggtactggccgcgctcgcgctgcaggaattcgagaagttc
gattccgagacccaggccaagaagaatgtcgtgcgcgccatcgaatcggtggcgaagaag
ctgggcaacacgccgtccgtgtgccgcaagtgctatgtccatccggccgtggtggaggcg
tacatggacggcgccgagctggccgccctacgcacccgcgccgaggaggagctgacgcag
gacctgcatgcgttgcagccggaagaggcggccgtgctggcgctgctgcagcagcgcctg
gagcgggaagcggagcaggcggcggccaagggcaagcagaagtcggtgcgcgtggccgcg
ccggcgcgggcgcggaccaagggcgctgccggcagcggtgcgcgggccggggcgcgcaag
ggcgccacggcgcctgcctga
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