Pseudoduganella chitinolytica: PX653_17240
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Entry
PX653_17240 CDS
T08857
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tct
Pseudoduganella chitinolytica
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tct03016
]
PX653_17240
Enzymes [BR:
tct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PX653_17240
Transfer RNA biogenesis [BR:
tct03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PX653_17240
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
WEF31204
UniProt:
A0ABY8BA01
LinkDB
All DBs
Position
complement(3898894..3900924)
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AA seq
676 aa
AA seq
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MNVFFEESGDFKVGTVLSQAGEACQVEMASGKRSKVKARDVLLQYEKPAPDVLLEQAKAV
AADVDLDFLWEVAGEEEFGFTELGAEYFGHAPLPHEAAGLILALHSAPIYFHKKGRGRYK
AAPEQTLKAALAGIEKKKQQAIVQQQFVDELKENRLPASMQNIVQQLLFKPDKNTIEYKA
LDAACNELHTTPARLMLAVGGIGSAKDLHMAKFLFENFPKGHGFPDVAVPAAPAGLPVAA
VEAFSIDDVTTTEIDDAFSVVHLADGKVRIGIHIAAPGLGIKPDDAIDKIARARMSTVYM
PGDKITMLPDSVVNAFTLAEGKTCPALSLYATLDPADWSVVSTETKAELVPIANNLRHNE
LDDVVNEETLANGEGEYPRKAELTLLWGWARHLEAGRMVKREAFGLKPEQNNRVDFNFYV
EDDVVTITRRKRGAPLDKIVAELMIFANSTWGKLMHDHGVPGIYRSQGQGVGGWNAKMQV
RMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILAVAEKGVMAPLVAPFKQKDANLF
AIVSAFDAAYAAYADHQANMERYWCLRWLGQNDAKQVDAVVLKDEVLRLTEIPLIIRLPG
MPSVARGAAVKLDVLRWDEVDLSIETRLLEIPADQAAADVDFDEEELVGETVPELVPDPD
QPADEKAEAAEQPPTV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcttttttgaagaatccggcgatttcaaggtcggtaccgtgctgtcccaggct
ggcgaagcctgtcaggtcgagatggccagcggcaaacgcagcaaggtcaaggcgcgcgac
gtgctgctgcagtacgagaagccggcgccggacgtgctgctggagcaggccaaggccgtg
gcggcggacgtcgatctcgacttcctgtgggaagtggcgggcgaggaggagttcggcttc
acggaactgggcgcggaatatttcggccatgcgccgctgccgcacgaagcggcgggcctg
atcctggcgctgcattcggcgcccatctacttccacaagaagggccgcggccgctacaag
gccgcgccggagcagacgttgaaagcggcattggccggcatcgagaagaagaagcagcag
gccatcgtgcagcagcaattcgtggacgagctgaaggaaaaccgcctgcccgcgtcgatg
cagaatatcgtccagcagctgctgttcaagccggacaagaacaccatcgagtacaaggca
ctggacgcggcctgcaacgaactgcacacgacgcccgcgcggctgatgctggcggtgggc
gggatcggctcggccaaggacctgcacatggccaagttcctgttcgagaacttccccaag
ggccacggtttcccggatgtggccgtgccggcggcgcccgccggcctgccggtcgccgcc
gtcgaggcgttttccatcgacgacgtgacgacgaccgagatcgacgacgcgttctccgtc
gtccacctggccgacggcaaggtgcgcatcggcatccacatcgccgcccccggcctgggc
atcaagccggacgacgcgatcgacaagatcgcgcgcgcgcgcatgtccaccgtttatatg
ccgggcgacaagatcacgatgctgccggacagcgtcgtcaacgcgttcacgctggccgaa
ggcaagacctgcccggcgctgtcgctgtacgcgaccctggacccggcggactggtccgtc
gtctcgaccgagacgaaggcggaactggtgccgatcgccaataacctgcgccacaacgag
ctggacgacgtcgtcaacgaggaaacgctggccaatggcgaaggcgagtacccgcgcaag
gccgaactgacgttgctgtggggctgggcgcgccacctggaggcgggccgcatggtcaag
cgcgaggcgttcggcctgaagccggagcagaacaaccgcgtcgacttcaacttctacgtg
gaagacgacgtcgtcacgatcacgcgccgcaagcgcggcgcgccgctggacaagatcgtc
gccgagctgatgatcttcgccaacagcacatggggcaagctgatgcacgaccacggcgtg
cccggcatctaccgcagccagggccagggcgtgggcggctggaacgccaagatgcaggtg
cgcatggtgacgcacgcggcgccgcaccagggcctgggcgtggaccagtacgcatggagc
acgtcgccgctgcggcgctatacggacctcgtcaaccagtggcagatcctggctgtcgcc
gagaagggcgtgatggccccgctggtggcgccgttcaagcagaaggacgccaacctgttc
gccatcgtgtcggcgttcgatgccgcctacgcggcctatgccgaccaccaggccaatatg
gagcgctactggtgcctgcgctggctgggccagaacgacgccaagcaggtcgacgccgtc
gtgctgaaggacgaagtgctgcgcctgacggaaattccgctgatcatccgcctgccgggc
atgccatcggtggcgcgcggcgccgccgtcaagctggacgtgctgcgctgggacgaggtg
gacctgtcgatcgaaacgcgcctgctggaaatcccggccgaccaggcggcggccgacgtc
gacttcgacgaagaggagctggtgggcgaaacggtgccggaactggtccccgatccggac
cagccggccgacgagaaagccgaagcggcagagcagccgcccacagtttga
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