Pseudoduganella chitinolytica: PX653_23900
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Entry
PX653_23900 CDS
T08857
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PX653_23900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tct03021
]
PX653_23900 (rpoC)
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_23900 (rpoC)
Enzymes [BR:
tct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PX653_23900 (rpoC)
Transcription machinery [BR:
tct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PX653_23900 (rpoC)
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PX653_23900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Myosin_VII_N
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
WEF32421
LinkDB
All DBs
Position
5360555..5364796
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAYM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMLFPDVSEVIRAYDNK
EVELATRITVRIVENPRDPATGEFVRTLTRYETTVGRAILSEILPKGLPFSVLNRSLKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPDVKKSLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVVKRDGTQTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGTQMKAMVEGGEVIEALRDRI
LGRVAGTDIVNPETQETVYEAGTLLDEDMVEDIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGMLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMAIKAGTPLA
TWDPLTRPIITEYAGTVRFENVEEGVTVARQVDEVTGLATLVVIDAKRRGSLTKTMRPQV
KLLNDDGHEVKIAGTEHAVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITNAGDTDYIVGEQVERSELLEENDKVIAAGKLPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARREKEVWEAEE
RNALLQAERAAMSGADVEAIETSTISQDEGGEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccctgctcgatctattcaagcaagtacagacgaacgagacctttgacgcgatc
aagatcggtctcgcctcgcctgaaaaaatccgttcgtggtcctacggcgaagtcaagaag
ccggaaaccatcaactaccgtacgttcaagccggaacgcgacggcctgttctgcgcaaaa
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtcatctgcgagaagtgcggcgtcgaagtcacgctggcgaaggtgcgccgtgag
cgcatgggccacatcgagctggcctcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgatatcgaacgcgtgctgtac
ttcgaagcatacgtcgtgaccgatcctggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgcgtacatg
ggcgccgagggcatccgtgaactgctgcgctcgatcgacatccaccgcgatgccgagacg
ctgcgcgtcgagctgaaggaatcgaagtccgaagcgaagatcaagaaatacgccaagcgc
ctgaaagtgctggaagcgttccagcgttcgggcatcaagcccgagtggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgcccgctggtcccgctggatggcggccgtttc
gccacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgtaataaccgcctgaag
cgcctgatggaactgcgcgcgccggaaatcattacgcgtaacgagaagcgcatgctgcag
gaagcagtggactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgctgaagtcgctggccgagatgatcaagggtaagggcggtcgtttccgtcag
aacttgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctgaaactgcaccagtgcggcctgccgaagctgatggctctcgaactgttcaagccattc
atcttcaacaagctcgaactgatgggcctggcgacgacgatcaaggcggccaagaagctg
gtcgagatccaggaaccggtggtctgggacatcctggaagacgtgatccgcgaacacccg
atcatgctgaaccgtgcaccaacgctgcaccgcctgggtatccaggcgttcgagccggtg
ctgatcgaaggtaaagccatccagctgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgtccacgtgccgctgtcgatcgaagcacagatggaagcg
cgtacgctgatgctggcgtcgaacaacatcctgttcccgtcgaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactacgcgacgcgcgaggcgatcaacgcc
aagggcgaaggcatgctgttcccggacgtctcggaagtgatccgtgcgtacgacaacaag
gaagtcgagctggccacgcgcatcaccgtgcgtatcgtcgagaatccacgcgatccggcg
acgggcgagttcgtccgtacgctgacccgctacgaaacgacggtcggccgcgccatcctg
tccgagatcctgccgaagggcctgccgttcagcgtgctgaaccgctccctgaagaagaag
gaaatctcgaagctgatcaacacgtcgttccgcaagtgcggcctgcgtgcgaccgtcgtg
tttgccgaccagctgatgcagtcgggcttccgcctggcaacgcgcgccggtatctcgatc
tgcgtggacgacatgctggtgccggacgtcaagaagtcgctgatcgcgacggccgaatcg
gaggtgaagcagatcgagcagcagtacgcctcgggtctggtcaccgccggcgagcgttac
aacaaggtcgtcgacatctggggcaagacctcggacgaagtcggcaaggccatgatggac
cagctgaaagtggaagacgtcgtcaagcgcgacggcacccagacgacccaggaatcgttc
aacgcgatttacatgatggccgactcgggcgcccgtggttcggcagcacagatccgccag
ctggccggtatgcgtggtctgatggcgaaaccggacggctcgattatcgagacgccgatt
acggcaaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacccacggcgct
cgtaaaggtctggccgatacggcactgaagacggcaaactcgggttacctgacccgtcgt
ctggtcgacgtgacgcaggatctggtcgtgatcgaagacgattgcggcacgtccaacggc
acgcagatgaaggccatggtcgagggcggtgaagtcatcgaagccctgcgcgaccgtatc
ctgggccgcgtggcgggcaccgacatcgtcaatcctgaaacccaggaaacggtgtacgaa
gccggcacgctgctggacgaagacatggtcgaggacatcgaacgcatgggcatcgacgaa
gtcaaggtccgcacgccgctgacctgcgacacgcgttacggcctgtgcgccaagtgctac
ggccgcgacctgggccgcggcatgctggtcaactccggcgaagccgtcggtgttgtcgcg
gcacagtcgatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcagcggtggcctcgtccgtcgaagccaagtcgaacggtaccgtgcgc
ttcacggccacgatgcgttacgtcacgaacggcaagggcgcgcagatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccacggccgcgagcgcgagcgtcacaaggtgccg
tacggcgccacgctgatcgtcaaggatggcatggcgatcaaggccggcacgccgctggcg
acgtgggacccgctgacccgtccgatcattaccgagtacgccggtacggtgcgcttcgag
aatgtggaagaaggcgtcacggtggcccgtcaggtcgacgaagtcaccggcctggcaacc
ctggtcgtgatcgatgcgaagcgtcgcggttcgctgaccaagacgatgcgtccgcaggtg
aaactgctgaacgacgacggccacgaagtgaagatcgccggcacggaacacgccgtggcg
atcggcttccaggtcggcgcgctgatcatggtgaaagacggccagcaagtgtcggtcggt
gaagtcctggcgcgtatcccgacggaatcgcagaagacccgcgacattaccggtggtctg
ccgcgcgttgccgagctgttcgaagcccgttcgccgaaagacgcgggcatgctggcggaa
gtcaccggtacggtggccttcggcaaggaaacgaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcacgagttcctgatcaccaaggacaagcaggtcctggtccac
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccacaggac
atcctgcgcctgctgggtatcgaagcgctggcacgttacatcgtcgacgaagtgcaggac
gtctaccgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgtgcagatcaccaacgccggcgacaccgactacatcgtcggcgagcag
gtggagcgttcggagctgctggaagagaacgacaaggtcatcgccgcgggcaagctgccg
gcgacgtacgagaacgtgctgctgggtattacgaaggcatcgctgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacgcgcgtcctgacggaagcggcgatcatgggc
aagcgcgacggtctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatccctggc
ggtacgggcctggccttccaccgcgcccgtcgcgagaaggaagtctgggaagccgaagaa
cgcaacgccctgctgcaagccgagcgcgcagcgatgagcggtgcggacgtcgaggcgatc
gagacgtcgaccatctcgcaggacgagggcggcgaggcgtaa
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integrated database retrieval system
