Pseudoduganella chitinolytica: PX653_25215
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Entry
PX653_25215 CDS
T08857
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PX653_25215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tct03019
]
PX653_25215
03009 Ribosome biogenesis [BR:
tct03009
]
PX653_25215
Enzymes [BR:
tct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PX653_25215
Messenger RNA biogenesis [BR:
tct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PX653_25215
Ribosome biogenesis [BR:
tct03009
]
Prokaryotic type
rRNA helicases
PX653_25215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
UvrA_inter
Ribosomal_L12_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WEF32671
LinkDB
All DBs
Position
5651723..5653894
Genome browser
AA seq
723 aa
AA seq
DB search
MTATTQEPILFTDLDLSPALIKVLKEVGYEAPSPIQAATIPHLLANRDVLGQAQTGTGKT
AAFALPILSRIDIRQSAPQALVLAPTRELAIQVAEAFQRYAAHIPGFHVLPIYGGQSYGP
QLSALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQET
PEERQTALFSATMPAPIRRIANTYLNDPKEVTVAAKTGTAENIRQRYWLVSGMHKLDALT
RILEAEPFDGMIIFSRTKLGTEELTERLQARGFSAAAINGDMQQAARERTIGQLKEGKID
ILVATDVAARGLDVDRISHVVNYDVPYDSESYTHRIGRTGRAGRSGEAILFITPRERNLL
KSIERATRQPIKQMELPSLQAVNDVRIARFKDQITETLAQGGLEQFQQLVEEYEQEHDVP
ATEIAAALAMMARGNTPLLLDKKAEKGWHEDGVRPERAERGDRPERERAPRADRPALPKK
ERIHREPDPGMATYRIEVGYEDGVKPGNIVGAIANEGGVDSKNIGRIEIFEDYTVLDMPA
DLPAETLQLLTGVRVAGRMLRIRRDGEAAPEAAAAPAAPARKPAERKPVERKQNLDAIVE
SALTEDDAPPKKKKEKPGKVSMAMRPYRIEVGSKHAATPSNIVGAIANESGLEARYIGRI
EIFDDYSMLEMPEGMPPEIFQHLGKVWVGGQQLKISLADAMPPESGKHTPPRKPVAGKPK
AKR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaacaacccaggaacccattctgtttaccgatctcgacctcagcccagcgctg
atcaaggtcctgaaggaggtcggctacgaagcgccgtccccgatccaggccgccaccatc
ccgcacctgctggccaaccgcgacgtgctgggccaggcccagaccggtaccggcaagacg
gccgcgttcgcgctgccgatcctgtcgcgcatcgacatccgccagagcgcgccgcaggcc
ctcgtgctggcccccacccgtgagctggccatccaggtcgccgaggcattccagcgctat
gccgcccatatcccgggcttccacgtgctgccgatctacggcggccagagctacgggccg
cagctgtcggccttgcgccgcggcgtgcatgtcgtcgtcggcacccccggccgcgtcatc
gaccacctggacaagggctcgctggacctgtcgaagctgaagacgctggtgctggacgag
gccgacgagatgctgcgcatgggcttcatcgacgacgtcgagcgcatcctgcaggaaacg
ccggaagagcgccagacggcgctgttctcggccacgatgccggcgcccatccgccgcatc
gccaacacctacctgaacgatccgaaggaagtgaccgtcgcggccaagacgggtaccgcg
gaaaacatccgccagcgctactggctggtgtcgggcatgcacaagctggacgcgctgacg
cgcatcctggaagcggagccgttcgacggcatgatcatcttcagccgcaccaagctgggc
acggaagagctgacggaacgcctgcaggcccgtggcttctcggccgcggcgatcaatggc
gacatgcagcaggccgcgcgcgaacgcaccatcggccagctcaaggaaggcaagatcgac
atcctggtggccaccgacgtggccgcgcgcggcctggacgtggaccgcatcagccacgtc
gtcaactacgacgtgccgtatgactcggaaagctacacccaccgcatcggccgcacgggc
cgcgccggccgcagcggcgaagcgatcctgttcatcaccccgcgcgagcgcaacctgctg
aagtcgatcgagcgcgcgacgcgccagccgatcaagcagatggagctgccgtcgctgcag
gccgtcaacgacgtgcgcatcgcccgcttcaaggaccagatcacggaaaccctggcgcag
ggcggcctggaacagttccagcagctggtcgaggaatacgagcaggaacacgacgtgccg
gccacggaaatcgccgcggcgctggccatgatggcgcgcgggaacacgccgctgctgctg
gacaagaaggccgagaagggctggcacgaggacggcgtgcgtcccgaacgggccgagcgt
ggcgaccgtccggaacgcgagcgcgccccgcgcgcggaccgcccggccctgccgaaaaag
gaacgcatccaccgcgagccggaccccggcatggcgacctaccgcatcgaggtgggctac
gaggacggcgtcaagccgggcaatatcgtgggcgccatcgccaacgaaggcggcgtcgac
tcgaagaacatcggtcgcatcgagattttcgaggactacacggtgctggacatgccggcc
gacctgccggccgaaacgctgcagctgctgaccggcgtgcgcgtggccggacgcatgctg
cgcatccgccgcgatggcgaggcggcaccggaggcggctgccgccccggccgcgccggcc
cgcaagccggccgaacgcaaacccgtcgagcgcaagcagaacctggatgcgatcgtcgaa
tcggcgctgacggaagacgacgcgccgccgaagaagaagaaggaaaagccgggcaaggtc
agcatggcgatgcggccgtaccgtatcgaggtgggcagcaagcatgcggccacgccgtcc
aatatcgtgggcgccatcgccaacgaaagcggcctggaagcgcgctacatcggccgcatc
gagatcttcgacgactactcgatgctggaaatgccggaagggatgccgccggagatcttc
cagcacctgggcaaggtgtgggtcggcggccagcagctgaaaatcagcctggccgacgcg
atgccgccggagtcgggcaagcacacgccgccgaggaagccggtggccggcaagccgaag
gccaagcgctga
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