Pseudoduganella chitinolytica: PX653_25490
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Entry
PX653_25490 CDS
T08857
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PX653_25490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tct03019
]
PX653_25490
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_25490
Enzymes [BR:
tct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PX653_25490
Messenger RNA biogenesis [BR:
tct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PX653_25490
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PX653_25490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
ResIII
Viral_helicase1
PolC_DP2_N
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WEF32724
LinkDB
All DBs
Position
5714419..5719569
Genome browser
AA seq
1716 aa
AA seq
DB search
MSATFSSNFSACSAAGHPGVAASVVSIDLEVGRDSGRIHRFAGVHGKNGRPVAFPPGTLS
DALRALDGLADEASYLLGHNLLAFDLPQLRAAQPNLRLLGKDAIDTLRLNPLAFPRNPYH
HLVKHHHDGCLLGNCRNDPLLDAELALQVFADQIESLTAMAKEAPDLLLAWHWLTTEQRG
VGGLDHFFTEVRGAARPHASEAEAAMMRLLDDAGCTQARRDIIARAPQLAWPLAYALAWI
SVAGGDSVMPPWVRHQFPETGRLIRQLRDTPCGRPDCRWCEREHSALRQLQYWFGKRYTF
RPEPVHSVSGRPLQQEIVEAAMRGEHSLGILPTGTGKSLCYQVPALSRFARTGALSIVIS
PLVALMEDQVNGLRARDIQGCAAINGLLSMPERADVLDRVRLGDVSILLIAPEQLRNKGV
RKVLAQREIGAWIFDEAHCLSKWGQDFRPDYRYVARFIRENAEASPGQEMPLIQCLTATA
KPEVVADIVGHFRERLGVELRVFPGGAKRDNLDFEVIETTEAEKFTRVAALIERELPADA
PGGAIVYCATRKQVEEMAIYLCNKGHAAAAYHAKLPPERKKDTQHAFIAGKLRVIAATNA
FGMGIDKPDVRLVVHADIPGSLENYLQEAGRAGRDRAQARSVLLYSSEDVERQHGMSAAS
RLSRRDIQGVLRALRQLQRKKDRDHALVATPAEILEEDQDGKFKRDGNTDDTRVRTAIAW
LEEAGLVRREENAVQVFASSLRVRTAAEAERLLGELDAPYRQRCLRLVELLLAAGADDGL
STDELMAAGGFSADLLRETLFLFDRLGIASNDMAMTAFVHVAVENSSKKRLRDAAVLEAA
VIAALREDAPDFGVNDTAPLHLRLVTQRLKDQGYTALPQRVRQIIAGLAGDGRDGEEGKG
SLTVKRGSDPELLHVTLNRPWRLLERIAERRRNAAERLLDHWLSALPQGARGVDQLAETT
IGQLAASVASDALLAADTKDMRKLVERGLLWLHEQEVLRLNKGLTIFRPAMTLHLESNWK
LQFEKSNYQALALHYEELTRQIHIMAEYAERGIRQMADAVQLALDYFTYTREEFCRRWLP
GRESELTRQTTPQSWETIVDTLARPHQRNIVADDRDSANVLVLAGPGSGKTRVLVHRIAY
LIRMRRENPQAVLALAYNRHAALEIRKRLAALIGDDARGVTVLTCHALAMRLVGASFVHR
GGEEADFDGVLSEATALLEGRGLPPEDADAQRDRLLAGFRWILVDEYQDIGPGQYALIAA
LAGRKRSDEDGRLNLFAVGDDDQNIYAFAGASIEYIRRYTEDYKARQEQLVENYRSTRHI
VAVANLVIGRSKERMKQQAIRVNAARANAAPGGVWQQVDPVTQGRVQILPTGRNADQQAL
AIYTELRRMMALGLDLARTAVIARQWKYLDPVRAALEAAGIPVSMADEEAPSLWRLRETQ
ALLAYLEGLCASDGKRLLKAGDLQSWLAERDGSCWWRVLREAVDAFVQDTQEAEVPLAYF
QEWLAEWGRASRLQQDGILLLTAHRAKGLEFDHVFVLDGDWRNGQGEDADAARRLYYVAM
TRAKATLTLANMEPGNPMIDTLGEHACLVRRPPISWLPAPGPLERRFHLPGQRDLKLSFA
GWKEANSIVHRAIANLRVGDRLSYVEDEQGARLMDETGVVVGRFSKNFRPPVGMRCVLAR
VRAVVVWRKCDNAPEFQARCQRDRWEVVLPELVFER
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctacgttcagctccaatttcagtgcttgctcagccgctggccatcccggcgtt
gccgccagcgttgtttcgattgacctcgaggttggtcgtgacagtggacgcattcaccga
ttcgctggcgtacatggcaaaaacgggcggccggtggcttttccgcccggtacgctgtct
gatgcattgagagccctcgatggcctggccgacgaggccagctatttactggggcacaac
ttgctggccttcgacctgccccagttgcgtgcagctcagcccaatctgcgcctgctgggc
aaggatgcgatcgacacattgcgccttaaccctctggcgttcccgcgcaatccctaccac
catctggtcaagcaccaccacgacggctgcttgctgggaaactgtcgcaacgatccactt
ctcgatgccgaactcgccctgcaggtcttcgccgatcagatcgagagcctgacggcgatg
gcaaaggaagcaccggaccttctgctggcatggcattggctgaccactgaacagcgtggg
gtaggcggactggatcatttttttaccgaggtacgcggggctgcgaggccacatgcatcc
gaagccgaggccgccatgatgcgcttgctggacgacgccggttgcacccaggcgcgccgc
gacatcattgctcgggcgccgcaattggcatggccgctggcgtatgcactggcttggatc
tccgtggcaggcggcgattcggtcatgccgccatgggtacggcaccagtttcccgagacg
gggcggctgatccggcagctgcgcgatacgccctgcggcagaccggactgccggtggtgc
gagcgcgaacacagcgccctgcggcagttacagtactggttcggcaagcgttacacgttc
cgccccgagccggtacacagcgtcagcggccggccgctgcagcaggagattgtcgaggcg
gcgatgcgaggcgagcattcattgggcatcctgccaaccggtaccggcaaatcgctgtgc
taccaggtacccgccttgtcgcgcttcgcgcgtaccggagccctgtcgatcgtcatctct
ccgctggtagcactgatggaagaccaggtcaacgggctgcgtgcacgggacattcagggg
tgcgctgccatcaacggcctgctgtccatgccggagcgcgcggacgtgctcgacagggtg
cgcctgggcgatgtcagcatcctgctgatcgcacccgagcagttgcgcaacaaaggtgtg
cgcaaggtgctggcgcagcgcgagatcggcgcgtggatctttgacgaagcgcactgcctg
tcgaaatggggacaggatttccggccggattaccgatatgtggcgcgcttcatccgcgaa
aacgccgaggccagtcccggccaggaaatgcccctgatccaatgcctgacggccaccgcc
aagcccgaggtcgtggctgacattgtcggccatttccgcgaacggctgggtgtcgagctg
cgcgtatttcccgggggcgccaagcgcgataacctcgatttcgaagtgattgaaacgacc
gaagccgaaaagttcacccgtgtcgccgcgttgatcgaacgggagttgccggccgacgcc
ccgggtggtgccatcgtttactgtgccactcgcaagcaggtcgaggagatggcgatttac
ctgtgcaataaagggcatgccgctgccgcctaccacgccaagctgccgccggaacgcaag
aaggacacacagcatgctttcatcgcgggcaagctgcgtgtgatcgccgcaaccaatgcc
tttggcatgggcatcgacaagcccgacgtgcgcctggtcgtgcatgccgacatccccggc
tcgttggaaaattacctgcaggaggcgggccgggccggacgcgaccgcgcacaggcgcgc
agcgtcctgttgtactcctccgaggacgtggaacgccagcacggcatgtccgcggcgtcg
cgcctgtcgcggcgtgatatccagggcgtgttgcgcgccctgcggcaactgcagcgcaag
aaagaccgcgaccatgcgctggtggcaacgccggccgagatcctggaagaggaccaggac
ggcaaattcaagcgcgacggcaataccgatgacacccgcgtacgcacggccatcgcctgg
ctggaagaggcagggctggtgcgacgcgaggagaatgcggtgcaggttttcgcctcgtcg
ttgcgtgtcaggaccgcggccgaggccgagcgactgctgggggagctcgatgcaccgtac
cgccagcgttgcctgcgcctggtcgagttgctgttggccgccggcgccgacgacgggctg
tccaccgacgaactgatggcggctggcggcttcagtgctgacctgctgcgcgaaaccctg
ttcctgttcgaccgtctgggcattgccagcaacgacatggcgatgacggcctttgtccac
gtggcagtggagaactcatcgaaaaagcgcctgcgcgatgccgctgtcctggaagcggcc
gtgatcgccgcgctgagggaagacgcgcccgactttggtgttaacgacaccgcgccgctt
catttgcggctggtgacgcaacgcctgaaggatcagggatacacggcactgccgcaacgt
gtacgccagatcattgccgggctggcgggcgacgggcgcgatggagaggaaggcaagggg
agcctgaccgtcaagcgcggcagtgaccccgagctgttgcacgtgaccctcaaccggccc
tggcgcctgctggaacggattgccgaacggcgccgcaacgccgcggaacggctgctcgat
cattggctgtccgccctgccgcaaggggcacgtggcgttgaccagctggcggaaaccacg
ataggccagctggcagcgagtgtggccagcgacgccctcctggccgccgatacgaaagat
atgcgcaagcttgtcgagcgagggttgctgtggctgcacgagcaggaggtattacgactg
aacaagggactgaccatcttccggccggccatgaccttgcacctggaaagcaactggaaa
ctgcagtttgaaaagagtaattaccaagcgctggctttgcattacgaagaactaacccgg
caaatccacatcatggcggaatatgcggagcgcggcatccggcagatggcggacgccgtc
cagctggcgctggactatttcacgtacacgcgcgaggagttctgtcggcgctggctgccg
ggcagggaatcggagctgacccgccagacaacgccgcagtcctgggagacgatcgtcgac
acgctcgcacgccctcaccagcgcaatatcgtggcggacgatcgcgacagcgcaaatgta
ctggtgcttgcgggcccaggttcaggcaaaacgcgagtgctggtccatcggatcgcctat
ctgatccgcatgcgccgcgagaatccgcaggcggtgctggcgctggcatacaaccgccat
gccgctctggagattcgcaagcgcctggccgcactcatcggcgacgacgcgcgtggcgtc
accgttctgacctgtcacgccctggccatgcgcctggtcggggcgagcttcgtccatcgc
ggcggcgaggaggctgatttcgatggtgtgctgtccgaggcgaccgctctattggaaggg
cgcggtttgccgcccgaggatgcagacgcccagcgcgaccgcttactcgccggattccgc
tggatactggtagacgaataccaagacatcggccctggtcaatatgccttgatcgctgcc
ctggccggccgcaaacgcagcgacgaggacggacgcctgaacctgttcgcggtcggcgac
gacgaccagaatatctatgccttcgctggcgcttcgatagaatacattcgtcgctatacg
gaagactacaaagcgcgccaggaacagctcgtcgagaattatcgcagcacgcgacacatc
gtcgcggtagccaatctggtgatcggccgctccaaggagcgcatgaaacagcaggcgatc
cgtgtcaacgctgcccgtgccaacgcggctccgggcggtgtgtggcagcaagtcgacccg
gtgacccaaggacgggtccagatcttgccgactgggcggaatgcggatcagcaggcgttg
gccatctacacggagttgcggcgcatgatggcgctcggcctcgacctggcccggacggca
gtgatcgcgcgacaatggaagtatctcgacccggtgcgagccgccctggaagccgccgga
attccggtcagcatggcggacgaggaggcgccgtcgctgtggcgcttgcgggaaacgcag
gcgttgctcgcttacctcgaaggtctttgcgccagtgacggcaagcgtttgctcaaggcc
ggcgatttgcaaagctggttggcggagcgcgacggctcgtgctggtggcgcgtgctgcgc
gaggcggtcgatgcgtttgtccaggatacccaggaagcggaggtgccgcttgcctatttc
caggagtggctggcggaatggggacgggccagccgcctacagcaggacggcatactgctg
ctgacagcgcatcgcgcaaaaggactggaattcgaccacgtcttcgttcttgacggcgac
tggcgcaacgggcagggcgaagacgcggacgcggcgcggcggctctattacgttgccatg
acgcgtgccaaggcaacgctgacgctggcgaacatggagcccggcaatccgatgatcgac
acgctgggcgagcacgcctgcctagtccgcaggcctcccatctcctggctgcccgcgcct
ggccctctggaacgccgttttcacctgcccggccagcgggacctgaagctgagcttcgcc
ggttggaaggaagccaacagtattgtgcaccgtgccattgccaacctgcgcgttggcgac
agactaagttacgtggaagacgagcaaggcgccaggctgatggatgagaccggcgtcgtc
gtcggcaggttttccaagaacttccggccgccggtcggcatgcgctgcgtactggcgcgc
gtgcgcgcggtggtggtctggcgcaagtgcgacaacgcgccagagttccaagcacgctgc
caaagagatcgttgggaagttgtcttgccggagctggtgttcgagcgttga
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