Pseudoduganella chitinolytica: PX653_26610
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Entry
PX653_26610 CDS
T08857
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PX653_26610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tct03019
]
PX653_26610
Enzymes [BR:
tct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PX653_26610
Messenger RNA biogenesis [BR:
tct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PX653_26610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WEF32924
UniProt:
A0ABY8BAJ3
LinkDB
All DBs
Position
6000829..6002334
Genome browser
AA seq
501 aa
AA seq
DB search
MSDFETPSASGVQPVAPAQVRFSDFGLSPDILRALTDQGYEHPTPIQAQAIPVVLQGRDV
MGAAQTGTGKTAGFSLPIIQLLLAHANPSMSPARHPVRALILTPTRELAVQVAENVAAYS
RHTPLRSTVVYGGVDMKPQTAILRSGVEIIIATPGRLLDHIEQKTVSLGQVQMFVMDEAD
RMLDMGFLPDLQRIINLLPKQRQNLMFSATFSQEIKKLANSFLNSPVTIEVARSNATADK
VTQVVYKVAEEHKRDAVAHILRSREMKQVIVFSNTKIGASRLARGLEQEGMKASAIHGDK
TQQERMAALEAFKRGEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRA
GASGDAISIYSDKDERLLADIEKLIKQTVKRGELAGFTPSARGGDERGERRPPRRDSDRG
AGASAGPAGERGPRPERSGERERYGRPGGPSPRRDKVDPWFLKPYEPTRSTRPATPEATT
GSSPAKPKQKIAALLGGLPKN
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttgaaaccccttccgcctctggcgtacagcctgtggcacccgcccaggtg
cgtttctccgacttcggcttgtctccggacatcctgcgcgccctgaccgaccagggctac
gaacacccgacgccgatccaggcgcaggcgatccctgtcgtgttgcagggacgcgacgtc
atgggcgcggcccagaccggcaccggcaagacggccggcttctcgctgcccatcatccag
ctgctgctggcgcacgccaatccgagcatgagcccggcgcgccatccggtgcgggcactg
atcctgacgcccacgcgcgagctggccgtgcaggtggcggaaaacgtcgcggcctattcg
cgccacacgccgctgcgttcgaccgtcgtatatggcggcgtcgacatgaagccgcagacg
gcaatcctgcgaagcggcgtcgagatcatcatcgccacgccagggcgcctgctcgatcac
atcgaacagaagaccgtgtcgctcggccaggtgcagatgttcgtcatggacgaagcggac
cgcatgctggacatgggcttcctgcccgacctgcagcgcatcatcaacctgctgccgaag
cagcgccagaacctgatgttctcggccacgttctcgcaggagatcaagaagctggccaac
agcttcctgaacagccccgtgacgatcgaggtggcgcgcagcaatgccaccgccgacaag
gtcacgcaggtcgtctacaaggtcgccgaagagcacaagcgcgatgccgtcgcccacatc
ctgcgttcgcgcgagatgaagcaggtgatcgtgttctcgaataccaagatcggcgcctca
cgcctggcgcgcggcctggagcaggagggcatgaaggcctccgccatccacggcgacaag
acgcagcaggagcgcatggccgcgctggaagcgttcaagcgcggcgagatcgacgtgctg
gtcgccaccgacgtggcggcgcgcggcctggacatctccgacctgccgtgcgtgatcaac
tacgacctgccgtacaacgcggaagactacgtgcaccgcatcggccgtacgggccgcgcc
ggcgcgtcgggcgacgccatctcgatctattcggacaaggacgagcgcctgctggccgat
atcgaaaagctgatcaagcagaccgtcaagcgcggcgagctggccggcttcacgccatcc
gcgcgcggcggcgacgaacgcggcgaacggcgcccgccacggcgcgacagcgaccgcggt
gccggcgccagcgccggtcccgccggcgagcgtggcccccgtccggaacgcagcggcgaa
cgcgagcgctacggtcgtccaggcggtccgtcgccacggcgcgacaaggtcgatccttgg
ttcctgaagccgtacgagccgacccgttccacgcgcccggccacgccggaagcgacgacc
ggctcctcgccggccaagccgaagcagaagatcgcggcgctgctgggcggactgccgaag
aactga
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integrated database retrieval system
