Pseudoduganella chitinolytica: PX653_26770
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Entry
PX653_26770 CDS
T08857
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct03030
DNA replication
tct03430
Mismatch repair
tct03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PX653_26770 (dnaE)
03430 Mismatch repair
PX653_26770 (dnaE)
03440 Homologous recombination
PX653_26770 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tct03032
]
PX653_26770 (dnaE)
03400 DNA repair and recombination proteins [BR:
tct03400
]
PX653_26770 (dnaE)
Enzymes [BR:
tct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PX653_26770 (dnaE)
DNA replication proteins [BR:
tct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PX653_26770 (dnaE)
DNA repair and recombination proteins [BR:
tct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PX653_26770 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
WEF32955
LinkDB
All DBs
Position
6038894..6042442
Genome browser
AA seq
1182 aa
AA seq
DB search
MSTEILEQPVIQPDEPAPPPGPGFVHLRVHSEYSIVDGLVRIDELVKAAVKDKQAALAVT
DLSNLFGMVKFYKSARGKGIKPIIGCDVWITNDDNREKPSRLLLLAKNRVGYLQLCELLS
TAWLTNQYKGRAELRAEWLAELKDKTYDIFPGESGADGLIALSGAHFGDIGCAIDNGNLE
LAERHAQKWSAIFPGHFYVEICRAGQPNQEAQVRHSVALAAKLRLPVVATHPVQFMSEHE
FIAHEARICIAEGEMIANAKRVKRFNEQMRFMTQEEMEILFADLPAALANSVEIAKRCNV
TLTLGKPQLPNFPTPGMTIDEFLVAETQKGLEERLVQLFPDPAVRERQRPRYEERLKFEN
DTIIKMKFPGYFLIVAEFIQWGKNNGVPIGPGRGSGAGSLVAYALKITDLDPLKYNLLFE
RFLNPERVSMPDFDIDFCQEKRELVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDVGRVL
DFGYNFCDGISKLIPFKPGKPVTIAEAIEEEPLLKERLENEEEVRQLLDLAQQVEGITRG
IGMHAGGVLIAPGKLTDFCPLYTQSGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDR
AVNYIRELDPAHKDFDLANVPLDDRASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFE
DIIALVALYRPGPMDLIPDFCKRKHGEKFDYPDPRTEGILSETYGIMVYQEQVMQMAQII
GGYSLGGADMLRRAMGKKKAEEMAEHREIFRKGAGERGLTTEKADEIFDLMEKFAGYGFN
KSHAAAYALLSYHTAYLKQHHTAAFMAANMSLAMDDTEKVKILVEDSIEVCGLTILPPDV
NLSAYRFRPDGPAPSVTGKKVTNIRYGLGGVKGAGQNAIEAIIAAREADGPFTSLFDFCR
RVDKKQINRRTIEALIRSGAFDSFGVDRSVLFASVGFAMECADQEARAANQVSLFGGDDS
DLVAPPEYVQALPWTDRQKLAEEKIALGFYLSGHMFDSYAVEARRFARTKLSELEPSREP
RMLCGVITGIRTQMTQRGKILIVSLDDKSAVVEVTVYSEIFEANKKCFKEDEFLAVTGKV
SEDRFTGGLRISAEKVYDIVAARLQFGRQMGWSLPEPVPATKLRDVLAPHRDDYGLPVQM
RIKPQGIDCVLQLGDDWRVAPSDALTVALEQVLGARDIAVEY
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgaaatccttgagcagcccgtgatccagcccgacgagccggcaccgcccccc
ggccccggtttcgtccacctgcgcgtgcactccgaatattcgatcgtggacggcctggtg
cgcatcgacgagctggtcaaggccgcggtcaaggacaagcaggcggcactggccgtgacg
gacctgtcgaacctgttcggcatggtcaagttctacaagtcggcgcgcggcaagggcatc
aagccgatcatcggctgcgacgtctggatcaccaacgacgacaaccgcgagaagccatcg
cgcctgctgctgctggcgaagaaccgcgtgggctacctgcagctgtgcgaactgctgtcg
acggcatggctgaccaaccagtacaagggccgcgcggagctgcgcgccgagtggctggcg
gaactgaaggacaagacctacgacatcttccccggcgagagcggtgccgacggcctgatc
gcgctgtccggcgcgcacttcggcgacatcggctgcgcgatcgacaacggcaacctggaa
ctggccgagcgccatgcgcagaagtggtcggcgatcttcccgggccatttctacgtcgag
atctgccgcgcgggccagccgaaccaggaggcgcaggtgcgccattcggtggcgctggcg
gccaagctgcgcctgcccgtggtggccacgcacccggtgcagttcatgtcggagcacgaa
ttcatcgcccacgaggcgcgcatctgtatcgccgagggcgagatgatcgccaacgccaag
cgggtcaagcgcttcaacgaacagatgcgcttcatgacgcaggaagagatggagatcctg
ttcgccgatctgccggccgcgctggcgaactccgttgaaatcgccaagcgctgcaacgtc
acgcttaccctgggcaagccgcagctgccgaacttccccacgccgggcatgacgatcgac
gagttcctcgtcgccgaaacccagaagggcctggaggagcggctggtgcagctgttcccc
gatcccgccgtgcgcgaaaggcagcgcccacgttacgaagagcgcctgaagttcgagaac
gacaccatcatcaagatgaagttcccgggctacttcctgatcgttgcggagttcatccag
tggggcaagaacaacggcgtgccgatcggccctggccggggttccggcgcgggctcgctg
gtggcctatgcactgaagatcacggacctggacccgctgaagtacaacctgctgttcgag
cgtttcctgaatccggaacgcgtttcgatgcccgacttcgacatcgacttctgccaggaa
aagcgcgagctggtgatccagcacgtgaaggacctgtacgggcgcgacgccgtgtcgcag
atcgccacgttcggcacgatggcggccaagggcgcgatccgcgacgtgggccgcgtgctg
gacttcggctacaacttctgcgacggcatctcgaaactgatcccgttcaagcccggcaag
cctgtcaccatcgccgaggcgatcgaggaggagccgctgctcaaggaacggctggaaaac
gaggaggaggtccggcagctgctggacctggcgcagcaggtcgagggcatcacgcgcggt
atcggcatgcacgccggcggcgtgctgatcgcgccgggcaagctgaccgacttctgcccg
ctgtacacgcagtcgggcgattcgggcgtcgtgtcgcagtacgacaaggacgacgtggag
gccgtcggcctggtcaagttcgacttcctgggcctgacgacgctgaccatcctggaccgc
gccgtcaactacatccgcgagctggatcccgcccacaaggacttcgacctggccaacgtg
ccgctggacgaccgcgcctcgtacgacctgctgaccaaggcaaagacggtggccgtgttc
cagctggagtcgcgcggcatgcagggcatgctgaaggacgcgcggcccgaccgcttcgag
gacatcatcgcgctggtggcgctgtaccgtcccggcccgatggacctgattcccgacttc
tgcaagcgcaagcacggcgagaagttcgactatcccgatccgcgcacggaaggcatcctg
tccgagacctacggcatcatggtctaccaggagcaggtcatgcagatggcgcagatcatc
ggcggctactcgctgggcggcgccgacatgctgcgccgcgcgatgggcaagaagaaggcc
gaggagatggccgagcaccgcgagatcttccgcaagggtgccggcgaacgcggcctgacg
acggaaaaggccgacgagatcttcgacctgatggagaagttcgcgggctacggcttcaac
aagtcgcacgccgccgcgtacgcgctgctgtcgtaccacaccgcctacctgaagcagcac
cacacggccgcgttcatggcggccaacatgtcgctggcgatggacgacacggagaaggtc
aagatcctcgtcgaggactcgatcgaggtatgcggcctgacgatcctgccgccggacgtg
aacctgtcggcgtaccgcttccgtcccgacggcccggcgccatccgtgacgggcaagaag
gtcaccaacatccgctacggcctgggtggcgtcaagggcgccggccagaatgccatcgag
gcgatcatcgccgcgcgcgaggcggacgggccgttcaccagcctgttcgacttctgccgc
cgcgtcgacaagaagcagatcaaccgccgcaccatcgaggcgctgatccgctccggtgcc
ttcgactccttcggggtcgatcgttccgtattgttcgcctccgtgggcttcgcgatggaa
tgcgccgaccaggaagcgcgcgcggccaaccaggtcagcctctttggcggcgacgacagc
gacctggtggcaccgcccgagtacgtgcaggcgctgccgtggacggaccgccagaagctg
gccgaggaaaagatcgcgctgggcttctacctgtccggccacatgttcgacagctatgcg
gtggaggcgcgccgcttcgcccgcaccaagctgtccgagctggagccgtcgcgcgagccg
cgcatgctgtgcggcgtgatcacgggcatccgcacgcagatgacgcagcgcggcaagatc
ctgatcgtgtcgctggacgacaagagcgccgtggtcgaagtcaccgtctacagcgagatc
ttcgaggccaacaagaagtgcttcaaggaggacgagttcctggcggtgacgggcaaggtg
tcggaagaccgcttcacgggcggcctgcgcatctcggcggagaaggtgtacgacatcgtt
gccgcgcgattgcagttcggccgccagatgggctggtcgctgccggaaccggtgccagcc
accaagctgcgcgacgtgctggcgccacaccgcgacgactacggcctgccggtgcagatg
cgcatcaagccgcagggcatcgactgcgtgctgcagctgggcgacgactggcgcgtggcg
ccatccgacgcgttgacggtggcgctcgagcaggtgctgggcgcgcgcgacatcgcggtg
gagtactaa
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