Hydrogenovibrio crunogenus: Tcr_0184
Help
Entry
Tcr_0184 CDS
T00296
Name
(GenBank) 2',5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tcx
Hydrogenovibrio crunogenus
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tcx03016
]
Tcr_0184
Enzymes [BR:
tcx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Tcr_0184
Transfer RNA biogenesis [BR:
tcx03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Tcr_0184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Corona_NS2A
2H-phosphodiest
Motif
Other DBs
NCBI-ProteinID:
ABB40780
UniProt:
Q31J93
LinkDB
All DBs
Position
216569..217126
Genome browser
AA seq
185 aa
AA seq
DB search
MRTFVAVPVNAALQNVLISQLATLQSQPWASDVDWTPEKNWHLTLKFLGELSAEQVEAIE
RSMRDWFAEGMSYFEAELIAIKGFPQAQSGPFIVATLEATLLLQALVREIEEQLRCFEIP
KDRRAFRPHITLGKWKGKPDAFPELEISLEASWLRVDRLNLYESVQVEGRHQYKPLATHA
LETYD
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacatttgttgctgtgccagtgaatgcggcgcttcagaacgtattgataagtcag
cttgccaccttacaatcacaaccgtgggcttcagatgttgactggacaccggaaaagaat
tggcatttaacgttaaagttcttaggagaactctcggcggaacaagtggaagccattgaa
cgctcgatgcgagactggttcgccgaaggcatgagttactttgaagcggagttgattgcg
attaaagggtttcctcaggctcaatcgggtccttttattgtcgcgacgctggaagcaacc
ttacttttacaagcgttggttcgagaaatagaggagcagctacgttgcttcgagattcct
aaagatcgacgagcgtttcgaccgcatatcactttaggtaaatggaaaggaaagccagac
gcttttcctgaacttgaaatctctctagaagcatcctggttgcgagtggaccggttgaat
ttgtatgaaagtgttcaagtagaggggcgccatcaatataagcctttagcgacccacgca
ttagaaacgtatgattaa
DBGET
integrated database retrieval system
