Hydrogenovibrio crunogenus: Tcr_0346
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Entry
Tcr_0346 CDS
T00296
Name
(GenBank) Chaperonin 60 kDa subunit (groEL protein)
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tcr_0346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcx03019
]
Tcr_0346
03110 Chaperones and folding catalysts [BR:
tcx03110
]
Tcr_0346
03029 Mitochondrial biogenesis [BR:
tcx03029
]
Tcr_0346
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tcx04147
]
Tcr_0346
Enzymes [BR:
tcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Tcr_0346
Messenger RNA biogenesis [BR:
tcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Tcr_0346
Chaperones and folding catalysts [BR:
tcx03110
]
Heat shock proteins
HSP60 / Chaperonin
Tcr_0346
Mitochondrial biogenesis [BR:
tcx03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Tcr_0346
Exosome [BR:
tcx04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Tcr_0346
Exosomal proteins of other body fluids (saliva and urine)
Tcr_0346
Exosomal proteins of breast cancer cells
Tcr_0346
Exosomal proteins of colorectal cancer cells
Tcr_0346
Exosomal proteins of bladder cancer cells
Tcr_0346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Lar_N
Motif
Other DBs
NCBI-ProteinID:
ABB40942
UniProt:
Q31IT1
LinkDB
All DBs
Position
393950..395584
Genome browser
AA seq
544 aa
AA seq
DB search
MAKDVRLGLDAREKMVEGINVLADAVKVTLGPKGRNVVLEKSFGAPTVTKDGVSVAREIE
LEDKFMNMGAQMVKEVSSQTNDVAGDGTTTATVLAQSIVREGMKSVAAGMNPMDLNRGIH
KAVEAVVKEIQKMSVPCTTTESIAQVGTISANSDSAVGKMIAEAMEKVSTEGVITVEEGS
SLHDELVVVEGMEFDRGYLSPYFVTNQEKMVAELDNPYILLHDKKISNIRDLLPTLEAVS
KAGRPLLIIAEDVDGEALATLVINNMRGIVKATAIKAPGFGERRKAMLQDMAVLTGGTVI
SEEVGLTLENVTLDMLGETKSAVVGKDSTKLIDGAGAKADIEARCAQIRSQAENTTSEYD
SEKLQERLAKLAGGVAVIKLGAATEVEMKEKKDRVDDALHATRAAVQEGIVAGGGVALVR
ARSKVKVKGDNDEQQLGIEIALRAMEEPMRQIAANCGLEGSVIVNKVMESKDNMGFDAAS
ETYVDMIKAGIIDPAKVTRSALQNAASVAGLVLTTGAAIADLPSKDGASADAAAGGMGGM
GGMM
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagacgtaagattaggtttagacgcccgcgaaaagatggttgaagggattaat
gtcctagcggatgcagtaaaagtaactttagggcctaaagggcgtaatgttgttctagaa
aaatcatttggtgcaccaacggtcactaaagacggtgtttcggtagctcgtgaaattgaa
ctggaagataagttcatgaacatgggtgcgcaaatggttaaagaagtctcttcacaaacc
aatgatgtggcaggtgacggtacaacaacagcgacggttctagcacagtctatcgtccgc
gaagggatgaagtcggttgcagcaggtatgaacccgatggatcttaaccgtggtatccac
aaagcggttgaagcggtagtaaaagaaattcaaaaaatgtcagttccttgtacaacgaca
gaatcgattgcacaggtcggtacgatttctgccaactctgattcggctgttgggaaaatg
attgctgaagccatggagaaagtatcaacagaaggtgtaattactgttgaagaagggtct
tctttgcatgatgagcttgttgttgttgaagggatggaatttgatcgtggttacttatca
ccgtacttcgtgacaaaccaagagaaaatggtggccgaattagacaacccatacattttg
ttacacgataaaaagatttcaaacatccgtgatttgttaccaacattggaagcggtttca
aaagccggtcgtccattattgatcatcgcggaagatgttgatggtgaagcgttggcgaca
ctggttatcaacaacatgcgcggtatcgtaaaggcgaccgccattaaagcacctggtttc
ggtgagcgtcgtaaagctatgcttcaagatatggccgttctaacaggtggtacggttatt
tctgaagaagttggtttaacgcttgagaatgtaactttagacatgctgggtgaaacgaag
tcggccgttgttggtaaagacagcactaaattgattgacggtgcaggtgcgaaagcagat
atcgaagcacgttgtgctcaaattcgctctcaagctgaaaacacaacgtctgaatacgat
tcagaaaaacttcaagagcgtttggctaagttggcaggcggtgtggctgttatcaagcta
ggtgcggcgactgaagttgaaatgaaagagaagaaagaccgtgtggatgatgcattgcat
gcgactcgtgccgcggttcaagaagggattgttgccggtggtggtgttgccttggttcgt
gcacgctcaaaagtcaaagtcaaaggtgacaacgacgagcagcaattagggattgagatt
gccttgcgtgcaatggaagaaccaatgcgtcaaattgcagcaaactgcggtttagaaggt
tcggtcattgtgaacaaggtgatggagtcaaaagacaacatgggcttcgatgccgcttct
gaaacgtatgttgatatgattaaagccggtatcattgatccagctaaagtaacgcgttct
gcattgcaaaatgcggcttctgttgccggtctagtcttgacaacaggtgcagcgattgca
gatcttccttcaaaagacggtgcatcagctgatgcggccgctggtggaatgggaggcatg
ggcggaatgatgtaa
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