Hydrogenovibrio crunogenus: Tcr_1168
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Entry
Tcr_1168 CDS
T00296
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tcr_1168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcx03400
]
Tcr_1168
Enzymes [BR:
tcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tcr_1168
DNA repair and recombination proteins [BR:
tcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tcr_1168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
CbiX
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABB41763
UniProt:
Q31GG0
LinkDB
All DBs
Position
complement(1270475..1273954)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSKNHSPYALLEADQISLKGQTSTWSLNNISESALALIEKAQNAPGLAVLLTENMAEANK
YSELLRFFAETDYPILSFPEWETLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVST
LIQKVVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLY
PMGSRTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFR
SHFGDDARNSQLYRSVKDGQTVDGLEYYLSLFHSNIATFFDYLPSDCLFFNQGDLQAQIR
QNWQDYQERYDIAQHNPDYPVLVPSELILSENETFSALKAFHRIQFSLQPTDKATATFKT
YPLPDLTIQSNSEYPLAKLNAFLDQYASEHNGRILYCAESTGRRETLLTILSKHPQFKGK
LPKQIDSWGEFKTSKAPYEIIVGPLEDSVYTDDFCILSESQIFGQTVIQKRRRKRKHSEF
DNAISNLIELDLGQPIVHFDHGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLH
LISRYTGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDE
EAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLICGDVGFGKTEVAMRAAFVAAY
SGKQVAVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQSAKETKQIVEAVKNNQVDII
IGTHKIIQNDMQFGNLGLIIIDEEHRFGVRQKEQLKKLRTEVDVMTMTATPIPRTLNMAM
NDLRDLSIIATAPAKRLAVQTFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAE
EIQALLPEAKVETAHGQMHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHR
ADKFGLAQLHQLRGRVGRSHHKAYAYLFTAGKALMTKDAEKRLTAIAKHDTLGAGFMLAS
HDLEIRGAGELLGDGQSGQIHEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGAEVELG
MPALIPEDYLPDIHTRLVFYKRIASAEDNNALQELEVEMIDRFGLLPDQVKNLFETTRVK
LVIDALNLKKVEASEAMIRIQFGSNPNINPLELIKLIQNHPKNYQLKGQIELKYFDTMLE
MKQRIQAIELIVATISNKE
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaatcattcgccttatgccttattagaagctgaccaaatttctctcaaaggt
caaacttcgacttggtctttaaataatatttctgaaagcgctctcgccttgattgaaaag
gcgcaaaatgcaccaggcctggcggttttattgactgaaaatatggccgaagccaataaa
tacagtgaattgttacgcttttttgccgagacagattaccctattctaagctttcctgaa
tgggaaaccttaccttatgaccagttttcgcctcatcaagatattatttcacaacgtctg
aaaaccttatatcagctgcccagcaccaaacaagggttgctgattctgcctgtcagcacc
ttgatacaaaaagtggttccccaccaatttattgaaaaatacacttttttattacagtgt
ggtgaaacggttgatatcgacgcttttactcgccagctggaatccagtggctaccagcgc
gtcagtcaggttatggagcatggtgaatttgcagtccgcggttccattatcgatttatac
ccgatgggcagtcgaacaccctatcggttagacttgtttgatgatgagatcgaaaccatc
cgaagttttgatcccgaaacacaacgcagtgttgattcgattgagcaaatcgaattatta
cccgctaaagaatatgatttgacgcctgaagggatcagtctttttcgtcaaaacttccgc
agccactttggagatgatgctcgcaatagccagctttatcgttccgttaaggatggacag
accgttgatggtttagaatattatctatctttgtttcactccaatattgccactttcttt
gactatctgccgtctgattgccttttctttaaccaaggcgaccttcaggcacagattcga
caaaactggcaggactatcaagaacgttacgacattgcgcaacataatcctgattacccg
gtgttagtaccttcagaactgattttatctgaaaatgaaaccttctctgccttaaaggcc
tttcaccgtatacagttttctctgcaaccaacggacaaagcgaccgcaacgtttaaaacg
tatcccttaccggacttaacgattcagtcaaacagtgaatacccgttggcaaagttgaat
gcgtttctagatcaatacgcatcggaacataacggccgtatcctttattgtgctgagtcc
actggtcggcgtgaaacgttattaacgattttatccaaacaccctcagttcaaaggtaaa
ttacccaagcaaatcgacagctggggtgaatttaaaacgtcaaaagcaccctacgaaatc
attgtcggccctctggaagattcggtttataccgatgatttctgcattctctcggaatcc
caaattttcggacaaacggtcattcaaaaacgccgtcgtaagcgtaaacattctgagttt
gacaacgcaatttcaaacttaattgaactggatttagggcaacctatcgtccactttgac
catggggtcggtcgttttctagggttagagacgatgactatacaaggcgaagaacatgag
tttctcatgattcaatatgcaggagacgcaaagctctatgtgccagtcacctctttacac
ctgataagccgctacaccggtgccagcgcagaaaccgctcccttgcacaagctcggttcc
gataaatgggataaagccaaacgtaaggctgctgaaaaagttcgcgatgttgcagccgaa
ctgctcgacatttatgcccagcgtgaagctcgccccggctatgcgtttcaaacagacgaa
gaagcgtatgctcgttttcgtgcaggttttccttttgaagaaacgccggatcaggaagcg
gccattgaagccgtgctgtctgatatgaaatcggacaaaccaatggaccgcctcatttgc
ggagatgttgggtttggtaaaacagaagttgcgatgcgagccgcttttgtagcggcttat
tctggtaagcaagttgctgttttggtgcccaccaccctgttgtcacaacaacatctggaa
aactttaaaaaccggtttgctgattggccgattcgaatcgaagggttgtcacgctttcaa
agtgcaaaagaaaccaagcagattgtcgaagcggtgaaaaacaatcaagtcgatatcatt
atcggcacccataaaatcattcagaacgacatgcaattcggtaatctggggcttatcatc
attgacgaagaacatcgttttggggtgcgtcagaaagaacagcttaaaaaacttcgtacc
gaagtggatgtgatgaccatgacggccactcctattccccgaaccttgaatatggcaatg
aacgatttacgtgacttgtccattatcgcgactgcgccggctaaacgtttggccgtgcaa
acctttgtgcaagattggaacccggatgttgtcaaagaagcttgccttcgagaaattcgt
cgtggtggacaaatttacctgctctttaataacgtcgacaaaattgaacagatggccgaa
gagatacaagcattgctgcctgaagccaaggttgaaacggcacatggtcaaatgcatgaa
cgagagttggaacaagtcatgcagaacttctaccatcgtcgatttaatattctggtgtgt
accacgattatcgaaacaggcatcgacattccaacagcaaacaccattttaattcatcga
gccgacaaattcggattagcgcaattgcatcagttgcgcggtcgcgttgggcgctctcat
cataaagcgtatgcttacctctttaccgctggcaaagcactgatgaccaaagatgcggaa
aaacgattaaccgcaattgcaaaacatgacaccttgggcgcaggcttcatgctggcgagt
catgatttagaaattcgtggggccggagagctgcttggggatggtcaatcaggccaaatt
catgaaattggctttgggctttattcagatttactggatcgtgctgttcgagctttgaaa
tcaggcaagcaacctgagttagatgctaaattgcataccggtgccgaagttgagctaggc
atgccggcccttatcccggaagattatttaccggatatccatactcgactggttttctat
aaacgtatcgccagtgctgaagataataatgccttgcaagaactggaagtggaaatgatt
gaccgttttgggttattgccggatcaggttaaaaacctgtttgaaacaacccgtgtgaaa
ttggttattgacgcattaaatctgaaaaaagtggaagccagcgaagcaatgattcgcatc
caatttggttccaaccctaacatcaacccactggaattgattaaattgattcaaaatcat
cctaagaactatcagttaaaagggcaaattgaattaaaatatttcgatacaatgctagag
atgaaacaacgaattcaagctatcgaattaatcgtagccactatttcaaataaggaataa
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