Hydrogenovibrio crunogenus: Tcr_1248
Help
Entry
Tcr_1248 CDS
T00296
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx03410
Base excision repair
tcx03430
Mismatch repair
tcx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tcr_1248
03430 Mismatch repair
Tcr_1248
03440 Homologous recombination
Tcr_1248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcx03400
]
Tcr_1248
DNA repair and recombination proteins [BR:
tcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Tcr_1248
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Tcr_1248
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tcr_1248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
ABB41843
UniProt:
Q31G80
LinkDB
All DBs
Position
1362273..1364066
Genome browser
AA seq
597 aa
AA seq
DB search
MLKYPKKPLITERTPSDKIHQAALSLGLSELQAKLVASRLTEADFSHDNMPEELQKIVFP
KLQYLQHPEQLKNAKQAAELIADAVESDGKIVLATDYDTDGVTSAWVATRALIDYFGVSP
ERIEHMIGERKEGYGITEEVVNRILAIKGSIDLVISADQGSSDEPRIKRLADAGIKVCVT
DHHQMTTEGAPPSAACTVNPQQAGCDYDKTVAGCFVIFLVMGQTRTELIRRQVIPETTPS
LKDLTQNIALGTVADSVSLKSVNNRAIVQAGLAAINQFSHPAWQALQKMNDNQGQPFNAE
YLGFQVATRINAASRVSDVTTAFKFLNASSLEQATPLLAQLDQDNLDRRSQQEGMLKQAR
ETAEALYHENKFTLSIRMTGNAGIQGIIASRIGEQYGVPTIAMTDLEDGYLAGSGRGIVS
NIDLREAFQTMAERHPGLFKSMGGHKGAAGCMIPIEKFDIFSTLFEETIQEQLNHTVPIP
TIETDGRLTGRQLTPSLIQELNLLEPYGREWPKPLFSGVFEIQDLRPVGQTKTHLSFKLR
SDDRQIISAIFFNAKPTAEAPDGFSIGEKVECAYQPSLNTFYGKTSLQLKVVAMNSL
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaatatcccaaaaaaccgctcattaccgaacgaacaccttccgacaaaatacac
caagccgccctctcgcttggtttatcagagctacaagccaaactggtagccagccgatta
accgaagcggatttcagtcatgataacatgcccgaagaattgcaaaaaatcgtttttccg
aagctgcaataccttcaacacccggaacaacttaagaatgccaaacaagctgccgagtta
atcgctgatgccgttgagtcagatggaaaaattgtcttagcaaccgattacgataccgat
ggcgtcacctctgcctgggtcgcgactcgggcgctcattgattattttggtgtgtcgccc
gaacgaatcgaacacatgattggtgagcgcaaagaaggatacggcattaccgaagaagtt
gtgaaccgtattttggcgattaaaggctcaattgacctggttatttcggctgaccaaggg
tccagtgacgagcctcgaattaaaagactggctgacgccggtattaaagtgtgtgtaaca
gaccaccaccaaatgacgactgaaggcgcaccaccgagtgccgcctgcacagtcaaccct
caacaagcaggctgcgactacgataaaaccgttgcgggctgttttgttatctttttggtt
atgggacaaacgcgcacggaattgatccgcagacaggtgattcctgaaaccaccccttct
ttaaaagatttaacgcaaaatattgcattaggtacggtggcggacagtgtcagcctgaag
agtgttaataatcgtgccattgtccaagccggtttggccgccatcaatcagttttcacac
cctgcttggcaagctctccagaaaatgaacgacaatcaaggtcaaccctttaacgccgaa
tacctcggctttcaagtagccacccgaatcaatgcagcaagccgcgtcagtgatgtcacc
acggcgtttaagttcttaaatgcctccagcttagagcaagccaccccactgctggcgcaa
ctggatcaagacaacttggatcgccgcagccagcaagaaggcatgctaaagcaagcccgt
gaaacggctgaagcgctgtatcacgaaaataagtttaccttaagcattcgaatgacaggc
aatgccggcatccaagggattattgcatcgcgaattggcgagcaatacggtgtaccaacc
atcgcgatgaccgatctggaagatggctatctcgctggaagcgggcgtgggattgtaagc
aacattgatttacgagaagcatttcaaacaatggcggaacgccaccctggtctgttcaaa
tccatgggtggccacaaaggcgccgctggctgtatgatccccattgaaaagtttgatatt
ttttcaaccttatttgaagaaaccattcaagaacaactgaaccacactgttccaatcccg
accattgaaacagatggtcggttaaccggacggcaactgacgccttcgcttattcaagaa
ctcaatctattagaaccttatggaagagaatggcctaaaccattgttttcaggagttttt
gagatccaagacctgcgaccggtcggtcaaacaaaaacacatttatctttcaagctgcgt
tctgatgatcgtcaaattatttccgcgatattttttaacgccaagcctacggccgaagcg
ccagatggattttcgataggtgaaaaagtggaatgcgcttatcaaccgagtttaaatact
ttctacggaaagacatctctacaactcaaagtcgttgcgatgaattccttgtaa
DBGET
integrated database retrieval system
