Hydrogenovibrio crunogenus: Tcr_1490
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Entry
Tcr_1490 CDS
T00296
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tcr_1490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcx03019
]
Tcr_1490
03016 Transfer RNA biogenesis [BR:
tcx03016
]
Tcr_1490
Enzymes [BR:
tcx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Tcr_1490
Messenger RNA biogenesis [BR:
tcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tcr_1490
Transfer RNA biogenesis [BR:
tcx03016
]
Prokaryotic type
tRNA degradation factors
Tcr_1490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
ABB42082
UniProt:
Q31FJ1
LinkDB
All DBs
Position
complement(1610595..1613051)
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AA seq
818 aa
AA seq
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MTDTNKNENESLEPSVEQVETMTESHPSNNQDASTGEDMIADPHADREADKYENPIPSRE
FIIELLEKEQKPLRIKQIATILDIDDDERFEALSRRLKAMVRDGQILRNRRGAFGLIQKM
DLIKGKVIGHPGGFGFVQPEEGGGDLFLGDREMHKVFHGDKVIASVIGVDRKGRREGMIV
EIIEHANQTILGRLHMEDGLGWVQPNNNRIAQDIFIPQDGLLDAEEGQIVMVEVIHQPTK
RSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWPQELLDQLEAIPDEVTQEDKEGRKD
LRSLPLVTIDGADSKDFDDAVFAKRRKNGWRLVVAIADVSHYVKEGTPLDKEAYERGNSV
YFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMSIDNDGKLERTQFYDAVMNSKARLTY
DQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEILKGARSERGALEFDTTETRIVFDEHR
KIEKIVPVVRNEAHKLIEECMLMANVATARYLKWHKIPMLYRVHEKPSEERLKNLRTFLG
DFGLTLEGGDEPDANDYATITEAVKGQPHEHLVGTVLLRSMNQAVYQPDNLGHFGLNYEY
YAHFTSPIRRYPDLLIHRAIRFAWTKQDVSKFKYSEKDMKALGEHCSGTERRADEATRDA
VTFLKCEFLSHRLGEEYDAVVTAATNFGLFVELEPLYVEGLVHITELGEDYFHYDASRHC
LKGERTGKVYRLGDKLRVQVAQVNLDDRKIDLRFLSGGGDSSDEQAPIETKAADTSDSKP
AEEAPSQEDGDAPKKKKKRYYRKKGGGRNRKKKSSAAE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacacaaacaaaaatgagaatgaaagtttagagccgtctgtagagcaagttgag
acgatgactgaatcacacccttctaataatcaagatgcgtccacaggtgaagatatgatt
gcggacccgcatgccgatagagaagccgataaatacgaaaaccctattccaagtcgagag
ttcatcattgaacttttagagaaagagcaaaagcctctcagaatcaaacagattgcgacc
attttggacattgatgacgatgagcgctttgaagcgttatcacgtcgtttaaaagccatg
gttcgagatgggcaaatcttgcgtaatcgacgcggtgctttcggtttgatccagaagatg
gatctgattaaagggaaggttatcggtcatccaggtggttttggctttgtgcaaccggaa
gaagggggcggagacctgttcttaggtgaccgtgaaatgcataaggtattccacggtgac
aaggttattgcctctgtaatcggggttgaccgtaaaggtcgacgtgaagggatgattgtt
gagatcatcgagcatgcaaaccaaaccattttagggcgtcttcatatggaagatggactc
ggttgggttcagccaaataacaatagaattgcacaggatatctttattcctcaagacggg
cttcttgacgctgaggaaggacaaattgtcatggtggaggtaatccaccagccaacgaag
cgttcaagtgcgattggtaaaattattgaagtggttggtgattatcttgcaccgggcatg
gaaatagattctgcaattcatgcttacgatattccaaatgaatggccgcaagaattacta
gatcagttagaggccattccagacgaagtcacacaagaagataaagaaggtcgtaaagac
ttgcgcagtttgccattagttaccattgatggggcagactctaaagactttgatgatgct
gtttttgcgaaacgtcgtaaaaatggttggcgacttgtggtggcgattgcggatgtctcg
cattatgtcaaagaaggcacaccgcttgataaagaagcctatgaacgcggaaactctgtt
tacttcccgcaaaaagtggttccgatgttgccggaaaaactgtctaatgatctttgttcg
ctgaatccaaatgtcgaccgcctgtgtatggtatgtgacatgtccattgataacgatgga
aaactggaaagaacgcagttttatgatgcggtcatgaattcaaaagcacgtctgacatac
gatcaagtgcatgagatgttgacggataaagggtccgagcatcgcaaaacctttaaagat
gttgtgccaaatgtcgaagatctgaatgatctatatgagattttaaagggagctcgttcc
gagcgtggcgcgttagaatttgatacgacagaaacgcgcattgtatttgacgaacaccgt
aagattgaaaagattgtgccggttgttcgtaatgaagcacataagctgattgaagaatgt
atgttgatggcgaatgtcgcgacagcacgttatttgaaatggcataaaattccgatgttg
tatcgtgtccatgaaaaaccgtcggaagaacgtttgaagaacttaagaacgttcttaggt
gatttcggtctgacgcttgaaggcggtgacgaaccagatgcgaacgattatgctacgatt
accgaagcggttaaaggtcagccgcatgaacatttggttggtacggtattgctgagaagc
atgaaccaagcggtttatcagcctgataatctaggtcactttgggttgaactatgagtat
tatgcgcactttacttctccaattcgccgttaccctgatttattgattcatcgtgccatt
cgttttgcctggacaaaacaagatgtcagtaagtttaaatattctgaaaaagatatgaag
gcgcttggtgaacattgttctgggacggagcgtcgtgcagatgaagccacacgtgatgcg
gtcactttcttgaagtgcgaattcttgtctcaccgtttgggtgaagaatatgatgcagtc
gttaccgctgcaaccaactttggtctgtttgttgagcttgaacctttgtatgttgaaggg
ttagtgcatattacagagcttggagaagattacttccattatgatgcttctcgtcattgc
ctgaaaggcgagcgtacgggtaaagtctaccgtctaggcgataagttgcgtgttcaagtg
gctcaagtgaatctggacgatcgtaagattgatttacgatttttatccggaggcggggac
tcttctgacgaacaagcgccgatagaaactaaagcagctgatacgtcagattcaaaacca
gctgaagaagcgccttcgcaagaagatggtgacgcacctaaaaagaaaaagaaacgttat
tatcgtaaaaaaggcggcggtcgcaatcgtaagaaaaaatcgagcgctgccgagtga
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