Hydrogenovibrio crunogenus: Tcr_1996
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Entry
Tcr_1996 CDS
T00296
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tcr_1996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcx03019
]
Tcr_1996
03400 DNA repair and recombination proteins [BR:
tcx03400
]
Tcr_1996
Enzymes [BR:
tcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tcr_1996
Messenger RNA biogenesis [BR:
tcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tcr_1996
DNA repair and recombination proteins [BR:
tcx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Tcr_1996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABB42586
UniProt:
Q31E37
LinkDB
All DBs
Position
complement(2195351..2197240)
Genome browser
AA seq
629 aa
AA seq
DB search
MTCYLAENGLFWRSDLKRFLSHREFMSDSKDVNALSLLQTVFGYDAFRSHQAEIIDDLVA
GSDCFVLMPTGGGKSLCYQIPALIRLGTAIVVSPLIALMQDQVSALKANGVKAAYYNSTL
DYESADQVLMQLHTGQLDLLYVSPERLLNQTFFQQLQQLPIALFAIDEAHCISQWGHDFR
PEYSKIGQLRDYFPQVPFIALTATADAATRQDILQRLNLHQPHVHVSSFDRPNIRYTVFE
KRQPMKQLLSFLDARPGHQESGIVYCLSRKRVEEVALQLQDKGYRAKAYHAGLPGDIRQT
VHQQFIRDEIDIVVATVAFGMGIDKPNVRFVVHYDLPKNIEGYYQETGRAGRDGLESEAL
LLYGAQDIVTARHFVENNPNEAQRRIESFKLSCMVDFAEAQSCRRSVLLNYFDERTDNAC
GNCDICLNPPRFFDATVAAQKALSCVYRLDQGFGVRHVIDVLRGMEHERIRQLNHQSLST
YGIGKEYSAVEWDSIIRQLIHLGYLVQDIQHYSVLKLTEKAGDILKGKVALQLALPRNKV
AKSTRGGQKNKADLTADELERFETLRRLRKDIADSEERPAYQVFGDAALIEMAKKCPQND
SELLAINGVGESKLERYGFEFLNQLRQFD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgacttgttatttagcggagaatggtttattttggcgctccgatttaaaacggttttta
tcacacagagagtttatgtccgattcgaaagatgtcaatgcgttatcccttttacaaacc
gtttttggatatgatgcttttcgttctcatcaagccgaaattattgatgatttggttgcc
gggtcagattgctttgtgctgatgccaacgggcggcggaaaatcgctctgctatcagatt
cccgctttgattcgcctgggaacagccattgtagtgtctccgttaattgcattgatgcaa
gaccaagtcagtgccttgaaagccaatggggtgaaggcggcttactataattccactttg
gattacgaatcggccgatcaagtcttgatgcaactgcatactgggcagttagatttatta
tatgtgtctccagagcgcttactgaaccaaacgttttttcaacagttacaacagttgccg
attgcattatttgcgattgatgaggcgcactgtatttcacaatggggacatgacttccga
ccggaatacagcaaaattgggcaactgcgagactattttccacaggtaccttttattgcc
ttaacggcgacggccgatgccgcgacccgccaggacattttgcaacgcttgaatttgcat
caacctcatgtgcatgtcagcagctttgatcgccctaatattcgatataccgtgtttgaa
aaacgtcagccgatgaagcagttgctcagttttttggacgctcgtccaggccatcaagaa
agtggtattgtgtattgtctgagtcgaaagcgcgtcgaagaggtggcattgcagttgcaa
gataagggttatcgtgcgaaagcgtaccatgcaggcttgcccggtgacatccgacagacc
gtacatcagcagtttattcgagatgaaattgatatcgtggtggccactgtggcattcggc
atgggcattgacaagccgaatgtgcggttcgtggtacattatgatttgccgaaaaacatc
gaaggctattaccaagaaaccggacgagcgggccgtgatgggttggaatcggaagcgtta
ctgttatacggtgcgcaagatattgtcacggcgcgacactttgtcgagaacaatccgaat
gaagcccagcgtcgcattgaaagttttaagttgagttgtatggtcgactttgccgaagcg
caatcttgtcgccgcagtgtgttattgaattactttgatgaaagaaccgataacgcatgc
gggaactgcgatatttgtttgaacccgcctcggtttttcgatgctacggttgcggcgcaa
aaagcgctgtcttgcgtctatcggctcgatcaagggtttggggtgcgtcatgtcattgat
gttctacgagggatggagcatgagcgcattcgtcagctgaaccaccaaagcttgagcacc
tatggcattggcaaagaatattcggctgtggaatgggacagtattattcgccagttgatt
catttagggtacttggtgcaggacattcaacattattccgtgctcaaactgaccgaaaaa
gcgggtgacattctcaagggaaaagtggcgctgcaattggccttgccgcgtaataaagtg
gccaagtcgactcgaggcggtcagaaaaataaagccgacttaacggcagatgaactggaa
cgctttgaaaccttacgccgtttgaggaaagacattgctgacagcgaagagcgtccggct
tatcaggtatttggcgatgccgctttgattgagatggcgaaaaaatgccctcaaaatgat
tcagagctgttggcgatcaacggagtaggcgaaagtaaattggaaagatatggctttgaa
ttcctcaaccaactgcgtcagtttgattaa
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