Hydrogenovibrio crunogenus: Tcr_2009
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Entry
Tcr_2009 CDS
T00296
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tcr_2009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcx03019
]
Tcr_2009
03009 Ribosome biogenesis [BR:
tcx03009
]
Tcr_2009
Enzymes [BR:
tcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tcr_2009
Messenger RNA biogenesis [BR:
tcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tcr_2009
Ribosome biogenesis [BR:
tcx03009
]
Prokaryotic type
rRNA helicases
Tcr_2009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABB42599
UniProt:
Q31E24
LinkDB
All DBs
Position
2214216..2215940
Genome browser
AA seq
574 aa
AA seq
DB search
MNTEIKFSDLGLSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFA
LPILSKIDLKQKDPQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRA
LKRGVHVVVGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTR
QIALFSATMPKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILE
AETFDGIIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIA
TDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLRSIE
ASTKKKITQMELPTAQEINDSRITRFKDKIVDAAQGTDLDFYQKMVESIESDNNIPAIEI
AAGLAKLLQGDVPFFLDEKPVKHKEFKERDGGRERNPRRAKGERSERGDRGNRSRRQTPP
NEGMARFRVEVGRQHGVKPGNIIGCIANEAGLDGEFIQKLTIEDNYSMVDLPSDMPKNVF
NELKGAWVCGQQLKINPVKDVSQSAKRRLKPRKK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagagatcaaattttcagatctagggctttctgcgcccattttaaaaacactt
gaagaaatcggttacgaaactccctccccaattcaggaacaggcgattcctgttttattg
aaaggcggagacatcttagggatggctcaaacagggacaggtaaaacagccgcgtttgcc
ttaccgattctgtccaagatcgaccttaaacaaaaagacccacaggttttagtccttgcg
ccaactcgcgaactcgctattcaggtagccgaggcattccaaacgttttctcgcggcgta
aaaggccttcatgtccttcctatttacggtggttcagaatatggcacacaaatccgtgcc
ttaaagcgtggtgtacatgtcgtggttggaacacctggccgtgttatggatcacattaaa
aaaggcactttaaagcttgatacattaaaagtgatgattttggacgaagccgatgaaatg
cttcgtatgggctttatcgatgatgttgagtggattctgaaacacactcccgatacgcgt
caaattgcacttttctcagccaccatgccgaaagaagtacaccgtatcgccaacacatat
ttacaagacccgaccgaagtcatcattaaacaaaaagcggcaaccgcctctttgattgaa
cagaaatactggctcgtcagcggactgcataaactggatgcgctaacccgtatcctagaa
gcggaaacctttgacggcatcatcatctttgttcgtaccaaaacagccactgtcgagttg
gccgaaaaactggaagcacgtggctatgccgctgccgccctgaatggggatgtggcacag
aaccaacgtgagcgtaccgttgaccaactgaaaaaaggcaaactggacatcctgattgca
accgatgttgtggcccgtgggttagatgttgagcgtatcagtcacgttattaactatgac
attccttatgataacgaatcgtatgttcaccgtatcggccgtacaggacgtgctgggcga
agcggtactgcgatcttatttgtggccccaagagagcgtcgtttattgcgttcgattgaa
gcgtcgacaaagaaaaaaatcacgcagatggaattgccaacggcacaggaaatcaacgac
agtcgtatcacacgttttaaagacaaaatcgttgatgcggctcaaggcaccgatcttgat
ttttatcaaaaaatggtcgagtccatcgaatcggacaataacatcccagccattgaaatt
gccgctggcctcgctaaattattgcagggtgacgtgccgtttttcttagatgaaaaaccg
gttaaacataaagaatttaaagagcgtgatggcggtcgtgaaagaaatccacgacgtgcc
aaaggtgaaagaagtgaacgaggtgatcgtggcaaccgcagtcgtcgtcaaacaccgcct
aatgaaggaatggctcgctttagagtggaagtcggccgtcaacacggtgttaaacctggg
aacatcattggctgcattgccaatgaagccggtttagatggcgagttcatccaaaaactg
accattgaagacaattacagcatggtggatttaccatcagacatgcctaaaaacgttttc
aatgaattgaaaggggcttgggtctgtggtcagcaacttaaaatcaatccagttaaagac
gtttctcaaagcgcaaaacgtcgtttgaaacctcgcaaaaaataa
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