Thiomicrospira cyclica: Thicy_0873
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Entry
Thicy_0873 CDS
T01517
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tcy
Thiomicrospira cyclica
Pathway
tcy03030
DNA replication
tcy03430
Mismatch repair
tcy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thicy_0873
03430 Mismatch repair
Thicy_0873
03440 Homologous recombination
Thicy_0873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcy03032
]
Thicy_0873
03400 DNA repair and recombination proteins [BR:
tcy03400
]
Thicy_0873
Enzymes [BR:
tcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Thicy_0873
DNA replication proteins [BR:
tcy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Thicy_0873
DNA repair and recombination proteins [BR:
tcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Thicy_0873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AEG31645
UniProt:
F6DCQ9
LinkDB
All DBs
Position
complement(1030737..1034240)
Genome browser
AA seq
1167 aa
AA seq
DB search
MADAPATFVHLHLHSEYSVKDSLLHIKPLVAKVKGLGQPALALTDQSNMFALLKFYNAAR
SQGIKPLLGADLWVHHEGEVFSITLLCQNHSGYLNLSKLISQAYLTNQQVYQANQLPLVE
QAWLAEHQAGLIVLLGLHSNIGQALARGNQALADQQQAWWQTHFADRVYLELVRTQRPGE
EAFIQQVLPLAQAWQWPVVATNDVRFLAREDFDAHEIRCCIHSGYVIEDPNRPRTYSEEQ
YLKSADEMQALFADIPQAITNTWLIAQRCNLSLDLGTYYLPEFPIPPDMTLDEYFRHECH
KGLDARLAFLFGDLAAEDFNAKQQEYRDRLDFELNTILQMGFPGYFLIVADFIQWAKNNQ
IPVGPGRGSGAGSLVAYALNITDLDPIQYDLLFERFLNPERVSMPDFDVDFCMERRDEVI
DYVSRHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGMVDGVAKLIPNELGIKLKDAL
EKEEDLKQRYRDDEEVKMLLDYALKLEGTVRNVGKHAGGVVIGPKPLDYYCPLYSEADGR
GVVTQLDKNDVETIGLVKFDFLGLRTLTIIDWALQAINAGKQPDDEGFVDINRIPLADPK
VFELIKTGKTTGVFQLESAGMQDLIRRLRPDCFEDIIALVALFRPGPLESGMVDNFIARK
HGKEAVSYPDAQYQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK
KPEEMAKERGKFEQGAIDNGVDGQLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQSAWLK
THYPAHFMAAQISSDMDNTDKVVHMINECYAMNLTLLPPDINRCAIRFQAADPQTIIYGL
GAIKGVGEAALDQVLADRQANGPFSDLFDFANRAGKKINRRVLEALIRAGAFDSLHTNRQ
AMLESVAMALTQADQFLTNAQSGQSDLFGELAADMAPPAQLAVVAEMPERQRLQGEKDTL
GLYLTGHPIEAYRQELADYARLSLAQLTPNKYEKRWVAGLVVAIRTKNTRSGDKMAFITL
DDRTARLEVVCRPAVFDAVRDWLRVDEVVLIKGAVSEDNFNGGIKLDAEQLVTLAEMRAQ
EARAIKLYCDIDQLAESKIAALQDGLLPYWATPEQQGLPLVLECYQQVDGARVSMQLKSQ
EMVRPEDGLLEVLHQQAWSLEVVKKRQ
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctccagcaacatttgttcatttgcatttgcactctgaatactcggttaaa
gatagtttacttcatattaaaccgctagtggcaaaggtcaagggtctcgggcaacctgcg
ttggccttgaccgatcaatccaatatgtttgcgttattgaaattttataacgcagcacgg
agtcagggcataaaacctttattaggtgctgatttgtgggtgcatcatgagggtgaggtg
tttagcatcactttgttgtgtcagaatcatagcggttatctgaatctttctaagctgatt
tcgcaagcctatttaaccaatcaacaggtctatcaagccaatcaattacccttagttgag
caggcttggttggccgagcatcaagcgggtttgattgtcttgttaggtttgcatagtaat
atcggccaagcgctagcacggggtaatcaagccctagccgatcagcagcaggcctggtgg
caaacccattttgccgaccgggtttatttggagctggtgcgcacgcaacggcctggagaa
gaggcgtttattcagcaggtgttgcctttagcgcaggcttggcagtggcccgtggtggca
actaatgatgtgcgttttttagcccgcgaagactttgatgcccacgaaattcgctgttgt
attcatagtggttatgtcatagaagatccaaaccgtccgcgtacctattctgaggagcag
tatctaaaatcggccgatgaaatgcaggcactatttgccgatattcctcaggcgattacc
aatacgtggttgattgctcaacgctgtaatttgagcttggatttgggtacctactattta
ccggagtttccgattccaccggacatgacgctggacgagtattttcggcacgaatgtcat
aagggtttggatgcacggttggcgtttttatttggtgatttagcggccgaggattttaac
gccaagcaacaggagtaccgtgaccgattagattttgagctgaacaccattttgcaaatg
ggttttccgggctattttttaatcgttgccgattttattcaatgggctaaaaataatcag
attccggttgggccggggcggggttcgggcgcgggttctttggtggcctatgccttaaac
attaccgatttagatccgattcaatacgacctgctattcgaacgttttttgaatccggag
cgggtatcgatgcccgactttgacgtcgatttttgtatggaacgccgtgatgaggtgatt
gattatgtgtcacgtcattatggccgtgaccatgtttcgcagattattacttacggcact
atggcggcgaaagcggtggtgcgcgatgtggggcgtgtgctgggtcatccttatggcatg
gtcgatggggtggccaaactgattccaaatgagttggggattaagctgaaggatgcgctc
gaaaaggaagaagatttaaaacagcgctaccgtgacgacgaagaggtcaaaatgctgttg
gattacgcattgaagctggaaggcacggtgcgtaatgtcggcaagcacgctggtggggtg
gtgattggaccgaagccgctggattattactgtccgctttattccgaagccgatggtcgt
ggtgtggtaacccagctagataaaaatgatgttgaaaccattggtttggtgaaatttgac
tttttgggcttgcggacccttaccattattgattgggcactacaggcgattaatgccggc
aaacaaccggatgatgaaggctttgttgatattaatcgcattcctttagccgatccgaaa
gtgtttgagctgattaaaaccggtaaaaccaccggggtgtttcagttggaatcggccggg
atgcaggatttgattcgtcgtctgcgtccggactgttttgaagatataatcgctttggtg
gcgctgtttcgtcccggcccgttggaatcgggaatggtcgataactttattgcgcgtaag
catggtaaagaagcggtgtcctatcccgatgcccagtatcagcatgacagtttaaaagaa
attctggagccgacctacggcattatcctttaccaagagcaggttatgcagattgcccag
gtactgtctggctataccctgggcggcgccgatatgttacgccgagcgatgggcaagaaa
aagcccgaagaaatggccaaagagcgtggcaagtttgagcagggcgcgattgataacggc
gttgatggtcagttggcgatgaagatttttgacttggttgaaaagttcgccggttatggt
tttaacaagtctcactccgctgcctatgccttagtatcttatcagtcggcttggctaaaa
acccattatccggctcattttatggccgcacagatttcatcggacatggataataccgat
aaagtagtgcacatgattaatgagtgctacgcgatgaatttaaccctgttgccgccggat
attaatcgctgtgcgattcgctttcaggcagcggatccgcaaacgattatttatggcctg
ggcgcgattaaaggtgtcggtgaggcggctttggatcaggtgctggcggatcgccaagcg
aatgggccttttagcgatttatttgattttgctaatcgcgccggcaagaagattaaccga
cgtgttttagaagccttgattcgagccggtgcgtttgattcgttacacaccaatcgccaa
gcgatgttggaatcggtggccatggccttgacacaggcggatcagtttttaaccaatgcg
caatcgggtcagagtgatttgtttggtgaattggccgctgatatggccccaccagcacaa
ttagctgtggtcgctgaaatgccagaacgccaacgcttgcagggcgaaaaagatacccta
ggcttgtatttaaccggccaccccattgaagcttatcgccaagaattggcggattatgcc
cgtttgagcttggcgcagctaacgccgaataaatacgagaaacgctgggtagccggcctg
gtggtggcgattcggaccaaaaatacccgtagtggcgacaaaatggcgtttattaccctt
gatgatcgcaccgcgcgtttggaagtggtgtgccgcccagcggtgtttgatgccgtacgc
gactggttgcgggttgatgaagtcgtgttgataaagggtgctgttagcgaagataacttt
aatggcggtattaaattagatgccgaacagctggttactctggctgaaatgcgggcacaa
gaagcgcgggcgattaagctatattgtgatattgatcagctggcggagtctaaaatagcg
gcactccaagatggcctgctaccctattgggccacgcccgaacaacagggtttaccctta
gtgctggagtgctatcagcaggttgatggtgcacgggtgagtatgcaattaaaatcccag
gagatggtgcggccagaagatggtttattagaggtgttgcatcagcaggcctggtcatta
gaggtagtgaaaaaacgccaataa
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