Thiomicrospira cyclica: Thicy_1080
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Entry
Thicy_1080 CDS
T01517
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tcy
Thiomicrospira cyclica
Pathway
tcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thicy_1080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcy03400
]
Thicy_1080
Enzymes [BR:
tcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thicy_1080
DNA repair and recombination proteins [BR:
tcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thicy_1080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
DUF7267
SecA_DEAD
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEG31847
UniProt:
F6D8J6
LinkDB
All DBs
Position
1226988..1230470
Genome browser
AA seq
1160 aa
AA seq
DB search
MSANAPKQSLFPFQHPKLAGHRSDWGYLNLTEQAWCVSQLLAQHQGLIVCLCQDSAQAQS
LSEQLAIFSDPAQTIIQLPEWETLPYDRFSPHQDIIASRLSSLHQLPQLQQGCLVIPINS
LVQHLPPKDYVQRQSLQLAVGDTLDIASFLSHLEQAGYQRVNQVMEPGEMAVRGALIDLF
PIGSHAPIRLDLFDDELESIRLFDPDTQLSQSQIEQINLLPAKEYDFSDEGIRQFRLQAR
EIFGGDVRNSQLYKTVSDQQNPGGLEYYLPMFFEQTDTLFDYLPTNTLFIEHSELEAALE
HNWHDYLERYEIGRHDNQRPLLPPQSLLMENQACFSALKNYHRIRLHSNEQSRPVTQLNI
QFDNLPLPNLHINHQVKQPLAPLQDWLTSVAKPVIICAESLGRREALFNLLRQHALEVEI
IDQAHPGQLSLVDLKPSSPINLAVAPIISSSHVTPLCLIAESALLGQRVEQKRRRKKGHQ
DFDQAIANLIELEINSPIVHYDHGVGRYQGLQTLEIQGENREFMVLEYANQDKLYVPVTS
LHLVSRYTGTSAEHAPLHKLGTDKWDKAKRKAAEKARDVAAELLEIYAKRAAQQGMAFEL
SDQAYQQFCSAFPFEETDDQLETIAQVLADMQAPKPMDRLVCGDVGFGKTEVAMRAAFVA
AYAGKQVAILVPTTLLAQQHFESFRDRFAEWPVNIAVLSRFQTAKEQNLTLEKLAEGGID
IVIGTHKLIQKDVKFNRLGLLIIDEEHRFGVRQKEQLKKWRTQVDILTMTATPIPRTLSM
AMNALRDLSIIATPPAKRLSVQTFVQAWQPQTVREACLRELRRGGQIYFLFNEVDKIDRM
ADDLAMLIPEAKVAVAHGQMNERQLEQVMQDFYHRRSQVLVCTTIIETGIDVPNANTILI
HRADKFGLAQLHQLRGRVGRSHHKAYAYMLTGEPNTLTDDARKRLDAIAKHDTLGAGFML
ASHDLEIRGAGELLGEGQSGQIQEVGFGLYNELLERTVKALKSGKQPALSLELEAHCEVE
LGSAALIPEDYLADIHTRLVFYKRIASAETDAELHELEVEMIDRFGLLPDQVKTLFSTTQ
IKLLAQPIGIIKIDASAAMIRIQFNAQPKISADKLIQLMQTHPQRYKLKGQAELKILDKM
ETVVDRVKHLQFTLTHLQAH
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaacgccccaaaacagtcattatttccatttcaacaccctaagcttgctggg
catcgctccgactggggttatttaaatcttaccgagcaggcctggtgcgttagccagtta
ctagcacaacaccaaggtttaattgtttgtctgtgccaagacagtgctcaggcccaaagc
ctaagtgaacaattggcgatttttagcgatcctgctcaaacgatcattcagctaccagaa
tgggaaacactgccctatgaccgtttttcgcctcaccaagatattattgccagtcgcctg
agtagtctgcatcaattgccacaattgcaacaaggctgtttagtcattcccattaacagc
cttgttcagcacctgccgccaaaagactatgtgcagcgccaaagcctgcaactcgccgtc
ggtgacaccctagatattgcatcgtttttaagtcatcttgaacaagccggttaccaacgc
gtcaatcaagtgatggaacccggtgaaatggcggttcggggcgccttaattgacctgttt
ccgattggcagtcatgctccgattcgtctagacttatttgatgatgaactggaaagcatt
cggctgtttgatccagatacccagctcagtcaaagccaaattgaacagattaatctctta
cctgccaaagaatatgatttttcagacgagggtattcgtcaattccgcttacaagcacga
gaaatttttggtggcgatgtccgcaattcacaactctataaaaccgtcagtgatcaacaa
aaccccggtgggctggaatattatttaccgatgtttttcgagcaaaccgacaccctgttt
gattacttgccaaccaatacgctatttattgaacattccgagctagaggcggctttagaa
cacaactggcacgactatctagagcgctatgaaattggccgtcatgataaccaacggcca
ctgctgccgccacaaagcctattaatggaaaaccaggcctgctttagtgcgctaaaaaac
tatcatcgtattcgcttgcatagtaatgagcagtcacgtcccgttactcagttgaacatt
caatttgataatctgccactgcccaatttacacattaatcatcaagtcaaacagccgctc
gcgccattgcaggactggttgacgtcggttgctaaaccggtgattatttgcgccgaatcc
ttgggtcgtcgtgaagccttatttaacctattacgccagcacgcgctcgaggtcgaaatt
atcgaccaagcgcacccaggccagctaagtctggtcgatttaaaacccagcagtcctata
aacctagccgtggcacctattatcagctcaagccacgttacccccctgtgcctgattgca
gaatcggccctactcggacaacgagttgaacaaaagcgccggcgtaaaaaaggtcatcaa
gactttgatcaagcgattgcgaatctcatcgagttggaaatcaacagccccattgtgcac
tatgatcatggggtgggccgttatcaaggtttacaaacccttgaaattcaaggtgaaaac
cgtgaatttatggtgttggaatatgccaaccaagacaaactctatgtacccgtaacctcg
cttcacttggtcagtcgctataccggcacctctgctgaacacgcgccattgcacaaattg
ggcacagacaagtgggataaagccaaacgcaaagccgctgaaaaagcccgcgatgtcgcc
gccgaactactcgaaatttatgccaaacgtgccgctcaacaaggcatggcgtttgagctc
agtgaccaggcctatcaacaattttgctccgccttcccctttgaagaaaccgacgatcaa
ctcgaaaccatcgcacaagttttggcggatatgcaagcacctaagccaatggatcgtcta
gtctgtggcgatgtcggctttggtaaaaccgaagtcgctatgcgtgccgcttttgtcgct
gcctatgccggcaaacaggtggcaattttggtgccaacaacgctattggcgcaacaacac
tttgagagttttcgtgatcgctttgccgaatggccagttaacattgcggtgctttctcgc
tttcaaaccgctaaagaacaaaacctcacattagaaaaactcgccgaaggtggtatcgac
atcgttattggcacccataaactgattcaaaaggatgtcaaatttaaccgcctaggtcta
ctgattattgacgaagaacaccgttttggcgtgcgccagaaagaacaactcaaaaaatgg
cgaacccaggtggatatcttaaccatgaccgccaccccaatcccacgcacgctcagtatg
gcgatgaatgccctacgcgacctgtcgattattgcgacaccaccggccaaacgtttgtcg
gtgcaaacctttgtgcaggcctggcaaccccaaaccgtacgcgaagcctgtttgcgagaa
ctacgccgcggcggtcaaatttactttctctttaatgaggtcgataagattgatcgcatg
gccgacgatctcgccatgttgatcccggaagcgaaggtcgcagtggcacacggtcaaatg
aacgaacgccaactcgaacaggtgatgcaagatttctatcaccgtcgcagtcaagttctt
gtttgtaccaccattattgaaaccggaattgacgtacccaatgccaatacaattttaatt
caccgtgccgacaaatttggtttagcccagttgcatcaattacgcggtcgcgtcggtcgt
tcacatcataaagcctatgcctatatgctcaccggtgaacccaatacactcaccgacgac
gcacgcaaacgtttagatgccattgccaagcatgacacgctgggtgccggttttatgctg
gcgagccacgatttagaaattcgcggtgctggcgaattgctcggcgaaggccaatcggga
caaattcaagaagttggttttgggctttacaatgaattgctggaacgcaccgtcaaagcc
ctaaaatcgggcaagcagccggcgctgagtcttgagctggaggcgcattgtgaagttgaa
ctcggcagtgccgcactcattcctgaagattatctggccgatattcatacacgcctcgtg
ttttacaaacgcattgccagtgccgaaaccgacgcggaattgcacgaactggaagttgaa
atgattgaccgctttggtttgctacccgatcaggtcaaaaccctgtttagcaccacgcaa
ataaaactactggcacaaccgataggcattattaaaatcgatgccagtgcggcgatgatt
cggatccaatttaatgcccaacccaagatttcggccgataagctgattcagctgatgcaa
acccacccgcaacgctacaaactgaaaggtcaagcagaattaaaaattcttgataagatg
gaaaccgttgtagatcgggtgaaacatctgcagtttaccctcacccatttgcaagctcat
taa
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