Thiomicrospira cyclica: Thicy_1152
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Entry
Thicy_1152 CDS
T01517
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tcy
Thiomicrospira cyclica
Pathway
tcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thicy_1152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcy03019
]
Thicy_1152
03009 Ribosome biogenesis [BR:
tcy03009
]
Thicy_1152
Enzymes [BR:
tcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Thicy_1152
Messenger RNA biogenesis [BR:
tcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thicy_1152
Ribosome biogenesis [BR:
tcy03009
]
Prokaryotic type
rRNA processing factors
Thicy_1152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEG31919
UniProt:
F6D8R8
LinkDB
All DBs
Position
1303866..1306370
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AA seq
834 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQNLYDLDIETPQQQKKKANIYKGTITRIEPSLEAAFVDY
GSDRHGFLPFKEIAEEYYPNGDYDPQLNIQQVLKEGQDVIIQVQKEERGNKGAALTTQIT
LAGSYVVMMPNNPKSGGISRRIEGDERSDLKETLRNIDIPDGMGLIVRTAGVGKSPEELQ
WGINYLVKLWEAIQHAAQEGAAPILIHQESDIVTLAIRDYLRQDIGEILIDDMDTFHRAR
DFIQQVMPQHVNKVKPYQDKIPLFTRFQIESQIESAYQREVVLPSGGVIVIDITEALTAI
DINSSRSTKGGDIEETAYHTNMEAAVEIARQLRLRDLGGLVVIDFIDMHSSRHQREVENQ
MREAVKNDRARVQIGKISRFGLLEMSRQRLRPSIDESTQIVCPRCRGVGVIRGVESLALS
ILRLIEEDAMKEGTKRITVQIPVDVATFLLNEKRAQIIKTEDRYNLHVLIVPNEHLETPQ
YLIERSRIGEQLGNETSYQTKTFIQPELPLLEQPEKKKEEPVLKNINIPSMPAPTEQPFS
AKANTKTEPRLLSKLWSWLFKDEPQNPTEKTAKSTQKTVKSDESSEGPRRNNRRRNGRRR
NANESDNSETKTSTQNDSSTTRDGEKLSEPRRRNRSRNGRSNNNDNVSPESTAPDKSTKD
ERRGSANVKSAEKTSSNEELNAKTEPQYSSSKRQTERATSKTPESTKSTEPRRRSRYNSR
TSLNRRRAPRDAENLSIHDFNVESASETPVPVSTSDIAVTTAIIANEATSSLPPLSTDNA
VDISALETAKDTSQTEGAVPEKEPETTPKFTSTEKSADSTSEDQAEQTKQTERV
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgcaacccagcaagaagagctgcgtgttgcactagtcgat
ggtcaaaatctatatgacctagacatcgagaccccacaacaacaaaagaaaaaagccaac
atttacaaaggcaccattacacgaattgaaccgagcttagaagctgctttcgttgattat
ggctctgaccgtcatggctttttgccattcaaagaaatagctgaagaatactatcctaac
ggcgactacgaccctcaattaaatattcaacaggtcttaaaagaaggccaagacgtcatt
attcaagtgcaaaaagaagagcgaggcaacaaaggcgctgcactaaccacccaaatcact
ctcgccggctcatacgtggtgatgatgccgaacaacccaaaatcaggtggtatttcacgt
cgtatcgaaggggatgaacgctcagacctaaaagaaacgctacgcaacattgacataccc
gatggcatgggcttaatagtccgcaccgcaggcgttggcaaaagccccgaagagttgcaa
tggggcatcaattatttggttaaactttgggaggctattcagcatgccgctcaagaaggc
gcagcaccgattcttattcaccaagaatcggacatcgtaactctcgcgattcgtgattat
ttacgccaagatattggagaaattctcattgatgacatggacaccttccatcgtgcgcgc
gattttattcagcaagtgatgccgcaacacgtaaataaagtgaagccttaccaagacaaa
attccattattcacccgcttccaaattgaatcacaaattgaatcggcctatcagcgtgaa
gtcgtattaccatctggtggcgtcattgttattgatattactgaagcactaacggctatc
gacatcaactcgagccgctcgactaaaggcggtgatatcgaagaaacggcctatcacacc
aacatggaagcagcggttgaaattgcacgtcaactgcgtcttcgtgacctaggtgggctt
gtagtcatcgactttattgatatgcattcttcacgccaccaacgtgaagtagaaaatcaa
atgcgtgaggcggttaagaacgaccgtgcccgcgtacaaattggcaaaatttctcgcttt
ggcttacttgaaatgtcgcgtcaacgcctacgcccgtccattgacgaatcaactcaaatt
gtttgcccacgttgtaggggcgttggtgtcattcgtggtgtagagtcattggccctatca
atcttgcgcttaattgaagaagatgctatgaaagagggcaccaaacggatcacagtgcaa
atacctgttgatgtagctaccttcttacttaacgagaaacgcgcgcagattattaaaacc
gaagaccgttacaacctacacgtattaatcgttcctaatgagcatttagaaacaccgcaa
tacctaatcgaacgatcacgaattggagaacaactaggcaacgaaaccagttaccaaact
aaaacctttatccaacctgaattgcccttgctagagcagccagagaagaaaaaagaagag
ccggtattaaaaaacattaacattccttcaatgcctgcacccactgagcaaccattctct
gctaaagcaaatacaaaaaccgaaccaagactgcttagcaaactttggagctggctgttt
aaggatgaaccacaaaatccaactgagaaaacggccaagtcaactcaaaaaacggtcaag
tccgatgagagttcagaaggaccgcgacgaaacaatcgtcgtcgtaacggacgtcgccgt
aatgctaatgaatcagataactccgagactaagactagcacccaaaacgacagctcgacg
actcgtgacggagaaaaattaagtgaaccacgtcgtcgcaatcgctccagaaatgggaga
agtaataacaatgacaatgtgtcacctgagtcaacggcaccggataaatcgactaaagat
gaacgccgaggcagtgccaacgtaaaatcagccgagaagacatctagcaatgaggaattg
aatgcaaaaactgagcctcaatatagtagttctaagcgtcagactgaaagagcaactagt
aaaacgcctgagagtacgaagagcactgaaccgcgtcgtcggagtcgctacaactcacga
actagcctcaatcgccgtcgcgcacctcgtgatgcagaaaatttaagtattcatgacttt
aatgtcgagagtgcttctgaaacgccggtgcccgttagcacctctgacattgctgtcaca
acagcgattattgccaacgaagcaacgtcgtctttgccaccgttatcaactgataacgcg
gttgacatatcggcattagagacggctaaagacacaagtcaaactgaaggggccgtacct
gaaaaagaaccagagacaacacctaagtttacttcaactgaaaaaagcgctgattcaaca
tccgaggatcaggcagaacaaactaagcagaccgagagagtttaa
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