Thiomicrospira cyclica: Thicy_1357
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Entry
Thicy_1357 CDS
T01517
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tcy
Thiomicrospira cyclica
Pathway
tcy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tcy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Thicy_1357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcy03021
]
Thicy_1357
Transcription machinery [BR:
tcy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Thicy_1357
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AEG32121
UniProt:
F6D9S2
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All DBs
Position
complement(1541046..1542833)
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AA seq
595 aa
AA seq
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MTKVERKQQLIDLIERAKDLGYLTYADVNDVLPDDIEEDQLSQVLTILGDFGIPLFDTAP
EEDELITKEGGAFDEAAAEAAILALAEVDSEFGRTTDPVRMYMREMGSVELLTRKGEIDI
AKRIESNIRDMLDSLSKYPMCAEKILRAFQKMDDGEGKLADVIQGFIDPNDLEDVQVEDL
SADSDNNSEPKDDSIDQALIDAFLADLEKLHRDAVKAEDLHGSSDPKAKKKRQLVVDHLR
TVKLVPLFTNGVIRDIKIKISQIREQERVIVNAVVRNVKIPRTRFVELFVGNETSPEFVD
MLIGEYTDKTDLLEEVRQDVKRAQKRLALIEKSEKMAISYYKKVYKDLSKSESQARAAKR
EMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
AITRSIADQARTIRIPVHMIETINKLNRIQRQLLQKMGREPTPEELAEEMEMPEDKIRKV
MKIAKEPISMETPIGDDEDSSLGDFIEDSNILSPSDSADLEGMSETVREMLSTLTPREAK
VLRMRFGLGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAERLRSFLD
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagtagaaagaaagcaacaattaattgatcttatcgaaagagcgaaggattta
ggctacctaacctatgctgatgtaaatgatgttctgcccgacgatattgaagaggatcaa
ctcagtcaagttcttaccatcttgggtgattttggtattccattatttgataccgcgcct
gaagaggatgaattgattaccaaagagggtggcgctttcgatgaagcggctgctgaagcc
gccattctagcactggccgaagtagactctgaatttggtcgtaccacagacccagtacgt
atgtatatgcgtgagatggggtcggttgagctattaacacgcaaaggtgaaattgatatt
gccaagcgtattgaatcgaatattcgtgacatgctcgactccttgtctaaatatcccatg
tgtgccgaaaaaattctgcgcgcatttcagaaaatggatgatggtgaagggaagttagcc
gatgttattcaggggtttattgatcctaatgacttggaagatgttcaggttgaggactta
agtgctgactctgacaacaattcggaaccaaaagatgattcaatcgatcaggccttaatt
gatgcgttcttggcagaccttgagaaattgcatcgtgacgctgtaaaagcagaggatctg
catggctctagtgatccaaaggcgaagaaaaaacgccaacttgttgtcgatcatttacgt
accgtaaaacttgtgcccttgtttacaaacggggttattcgcgacattaagattaagatt
tcgcaaattcgcgagcaagagcgtgtcattgtgaatgccgttgttcgtaatgttaagatt
ccgcgcacgcgatttgtcgaattgtttgtgggtaacgaaacaagcccagaatttgtcgat
atgttaattggtgagtacacagataagaccgatttacttgaagaagtgcgacaggacgtt
aagcgtgctcaaaagcgcttagccttaattgaaaaatctgaaaaaatggctataagttat
tacaaaaaagtctataaagatttgagtaaatctgaaagccaagcgcgagccgccaagcgt
gaaatgatcgaagcgaacctgcgtttggttatttcgattgcaaaaaaatatactaaccgt
ggcttacagttcttggatttgattcaagaaggaaatatcggtctaatgaaagcggttgat
aagtttgaataccgccgtggttacaagttctcaacctatgctacctggtggattcgtcaa
gcaattactcgttcgattgccgaccaggcacgtacaatccgtattccggtgcatatgatt
gagacgatcaataaactgaatcgcatccaacgtcagttactgcaaaaaatggggcgcgaa
ccgacccctgaggaactggcagaagaaatggaaatgccagaggataaaattcgcaaggtg
atgaaaatcgccaaagagccgatttcaatggaaacgcccatcggtgatgatgaagattct
tcattgggcgattttattgaggactctaatattttgtcaccatccgattcagcagacttg
gaaggcatgagtgaaactgtgcgtgaaatgctcagtaccttaacgccgcgtgaagccaaa
gtgttgcgtatgcgttttggcttgggcatgaatacggatcacactcttgaggaagtcggc
aagcagtttgatgtgacccgagaacgtattcgtcaaatagaggctaaggcattgcgtaag
ttgcgtcatccaagccgtgctgaacgtctgcgcagttttcttgattaa
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