KEGG   Trachymyrmex cornetzi: 108758656
Entry
108758656         CDS       T11212                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
tcz  Trachymyrmex cornetzi
Pathway
tcz03040  Spliceosome
tcz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tcz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108758656
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108758656
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcz03041]
    108758656
   04121 Ubiquitin system [BR:tcz04121]
    108758656
   03400 DNA repair and recombination proteins [BR:tcz03400]
    108758656
Enzymes [BR:tcz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108758656
Spliceosome [BR:tcz03041]
 Complex B
  Other components
   Prp19 complex
    108758656
 Complex C
   Prp19-CDC5 complex
    108758656
Ubiquitin system [BR:tcz04121]
 Ubiquitin ligases (E3)
  U-box type E3
   108758656
DNA repair and recombination proteins [BR:tcz03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    108758656
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Prp19 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz WDR55 WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR41 U-box Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_DCAF4 B-prop_COPA_B_2nd Tricorn_2nd PAS_11 RMC1_N WDR54
Other DBs
NCBI-GeneID: 108758656
NCBI-ProteinID: XP_018359205
LinkDB
Position
Unknown
AA seq 498 aa
MALSCAISNEVPEHPVISPVSGSIFERRLIEKYVTENGVDPINGKELAIEQLIDIKATPI
VKPKPPSATSIPAILKIMQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGIVQATIPQPAVAVEAGGTATQPMEQAGITEDVIQKLQERAT
VLTQERKRRGRSVPEDLMPQDSIRSFQTLASHPGLHSASVPGILALDIHNADTSKILTGG
ADKNATVFNKDTEQVVAILKGHTKKVRTINLNLMTASPDTTIRVWNVATSQTTLLLKAHD
APVTGLSLHPTGDYLLSSSLDQHWAFSDIRTGRLLTKIAGQAGQPLTTAQFHPDGLIFGT
GTADSQVKIWDLKEQSNVANFPGHTGPITAISFSENGYYLATAAEDSCVKLWDLRKLKNF
KTLQLEESYEVKDICFDQSGTYLAVAGTDVRVYLCKQWQELKVLNDHTAAATGVRFGKHA
QYIASTSMDRTLKLYGLS
NT seq 1497 nt   +upstreamnt  +downstreamnt
atggcgctatcttgtgcgatttctaatgaagtaccagagcatccagtaatatctcctgtc
tctggctcaatatttgagagacgtctcatagaaaaatatgtgactgaaaatggagtagat
cctattaatggcaaggaacttgccattgaacaacttattgatatcaaagcaactccaatt
gtcaagcccaaaccacctagtgcaacttctattccagcaatattaaaaattatgcaagat
gaatgggatgctgttatgttgcattcatttacattacgacagcaactccaaactgcaaga
caggaactgtctcatgctttatatcaacatgacgcggcttgccgtgtgattgctagattg
actaaggaagttactgctgctagagaggctcttgctactctcaaaccacaagctggaatt
gttcaggctacaatcccacagccggctgtggcagtagaagctggtggcacagcaacacaa
ccaatggaacaagctggtatcactgaagatgtaatacagaaacttcaagagcgagcaact
gttcttactcaagagcgaaaaaggcgtggacggtcagtaccggaagaccttatgcctcag
gacagtatccggtcattccaaactctggcatcacatcctggacttcactctgccagtgtg
cctggaattctggcacttgatattcacaatgcagatactagcaagattttaacaggtggt
gctgacaagaatgctactgtttttaacaaggatactgagcaagtagtggcaatcctcaaa
ggacacacaaaaaaagtacgcacaatcaatttaaatttgatgactgcgtcacccgatact
acaattcgtgtgtggaacgttgctaccagtcaaacaacattattattaaaagctcacgat
gcacctgtgactggattgtctttacatccaactggcgattatctactgagttcctctcta
gatcaacattgggccttttcagatatacgtaccggcagattattaactaaaattgccgga
caagcaggacaaccgttgacaactgcgcaattccatcctgatggtttgattttcggcact
ggcacagcggattctcaggtgaaaatctgggatttaaaagaacaatctaatgtagcaaac
tttccgggacacactggtccaatcaccgcgattagtttttccgagaatggatattacttg
gcaacagctgcggaagattcatgcgtcaagctttgggatttgcgtaaattgaagaacttc
aagacattacagttggaggaatcttatgaagtgaaagatatttgctttgatcaaagtgga
acttatttggctgtggcaggaacggatgtcagggtatatctctgtaaacaatggcaggaa
ttgaaagtcctaaatgatcacacagccgctgccactggcgttcgttttgggaagcatgca
caatatatcgcgtctactagtatggatagaacattaaaactgtacggattatcataa

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