Trachymyrmex cornetzi: 108759043
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Entry
108759043 CDS
T11212
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43 isoform X1
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
tcz Trachymyrmex cornetzi
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcz03041
]
108759043
Enzymes [BR:
tcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108759043
Spliceosome [BR:
tcz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108759043
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
ResIII
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
MOEP19
CMS1
Ndc10_N
KH_5
Motif
Other DBs
NCBI-GeneID:
108759043
NCBI-ProteinID:
XP_018359802
LinkDB
All DBs
Position
Unknown
AA seq
667 aa
AA seq
DB search
MDDNWDSDSKTSSRRYDRGYDHRRGNRRERESQFYRRSNRSFGDNNDSSRQNYNNDSYRK
SDEKSDSTNGLVMYIDSNNIGRLIGRGGSKIKALQEDSGARININRQYSENGQSAVTLTG
TDDAQQRAKSLIEDLLTERGGTERGVTERSNTYENECAQKPTFQPEEKEEIDWANFDWNK
ANEEYEERQKRRWAALPPIIKNFYEEDPAIANMPQSVVTQFRKTNNNIEVRHVFENAGGS
DENMKIPNPVQTFEQAFHAFPDILREIRKQSFEKPSPIQCQAWPILLSGQDLIGIAQTGT
GKTLAFLLPALIHIDGQVTPREERSGPNVLVMAPTRELALQIEKEVGKYSYHGIKAVCVY
GGGNRKAQIDTVTKGVQIVIATPGRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQI
RKTLLGVRPNRQTVMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLAAVHSVTQRIYMANE
DEKTDMMHQFFQEMDPHDKVIVFFGKKSKVDDISSDLALTNIDCQSIHGDRDQSDREQAL
EDLKTGAVQILLATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITF
MTRQDWHHAKALIDILEEANQFRKYLRKYIKWLKDMMHGKRKKNKKIHMEEATEAVDAAI
VGCKMIN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaattgggacagtgatagtaaaacatcgtcaaggagatatgatcgaggttat
gatcataggagaggaaatagaagggaacgagaaagtcaattttatagacgctctaataga
tcatttggggataacaatgactcaagtagacagaattacaacaatgattcatatagaaag
agtgatgaaaaatcagatagtacaaacggactggttatgtacattgatagcaataacata
ggaagactcatcgggaggggtggcagcaagattaaagctctacaagaagatagtggtgct
agaattaatatcaacagacaatatagtgaaaatggacagagtgctgtgacactaactggt
acagatgatgcgcaacaacgagctaagagtttaatagaggatttattaactgaaaggggt
ggaactgaaagaggtgtaactgaaagaagtaatacatatgaaaatgaatgtgcgcaaaaa
ccaacatttcagcctgaggaaaaggaagaaattgattgggctaattttgattggaacaag
gctaatgaagaatatgaggagcgtcagaagcggagatgggcggctttacctcctattata
aaaaatttttacgaagaagatccggccattgctaatatgccacagtcagtggtaactcaa
ttcaggaagactaacaataacatagaagttagacatgtttttgagaacgcaggaggttct
gatgaaaacatgaaaataccaaatcctgtgcaaacttttgaacaagctttccatgcgttt
ccagatatccttagggaaatacgaaaacaaagctttgaaaaaccaagtcctatacaatgt
caggcgtggcctattctactgagtggtcaggatctcattgggatagcgcaaactggaaca
ggaaaaactcttgcctttttactgcctgctctgattcacatcgatgggcaagtaactcca
cgcgaggagcgttctgggccaaatgttcttgttatggctccgacaagagaattggcattg
cagattgaaaaggaagtaggaaaatactcttaccacggcattaaagcggtgtgcgtatac
ggtggtggaaatcgcaaagcacaaatagacactgtgacaaaaggtgtgcaaattgtaatt
gcaactcccggaagattaaacgatttggttcaagcaaatgtattggatgtgtcggctgtg
acgtatcttatactcgatgaagcagatcgtatgttggacatgggttttgaacctcaaatt
cgtaagactcttctaggtgtacgaccaaatagacaaactgttatgacaagcgctacgtgg
ccccagggtgtaagacgcttagcccagtcatacatgaaaaatccgattcaagtatttgtt
ggatcacttgacttagcagctgttcattctgtaacacagaggatttacatggctaatgaa
gacgagaaaacagatatgatgcatcagtttttccaagaaatggaccctcacgataaggtc
atagtatttttcggtaagaagtcaaaagtggacgatatctctagtgatctggctttaacg
aatatcgattgtcagagtattcacggcgacagagatcaatcagatagagaacaagcatta
gaagatctgaagactggagccgttcagatccttctcgcaaccgatgtggctagtcgagga
atcgatattgaagatattacacacgtactgaattatgacttcccacgggatatagaggaa
tacgttcaccgagtcggtcgtaccggacgcgcaggtcgaacaggtgaaagtatcactttt
atgacaagacaggactggcatcatgcgaaagcactcattgatattcttgaagaggctaat
cagttcaggaagtacctgaggaagtatataaaatggctgaaagatatgatgcatggaaaa
agaaaaaagaacaagaagattcatatggaagaggcaacagaggcggtagacgcggctatc
gtaggatgtaaaatgattaattaa
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