Trachymyrmex cornetzi: 108759137
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Entry
108759137 CDS
T11212
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03020
RNA polymerase
tcz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108759137
09124 Replication and repair
03420 Nucleotide excision repair
108759137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcz03021
]
108759137
03400 DNA repair and recombination proteins [BR:
tcz03400
]
108759137
Enzymes [BR:
tcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108759137
Transcription machinery [BR:
tcz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108759137
DNA repair and recombination proteins [BR:
tcz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108759137
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
108759137
NCBI-ProteinID:
XP_018359945
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MSNIFGLEDDQYDEEDKEEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQR
IVEDSPQIELQAEAQHTTGEIEKPVKHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRN
LTYSAPLYVDITKTIEKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC
PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWI
NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEM
MEMVKPSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFC
ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL
YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS
TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ
PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII
VSEVSMVRDIRDREIRIYTDAGRISRPLLIVEGQNLLLQTRHINMLKERDYNNDGWQELV
GSGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDH
NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGI
NSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLT
CSGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFL
RNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF
SSEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQ
EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPME
GRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE
CKGCKNKTQIAQIRLPYAAKLLFQELMAMNIAPRLMTL
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatattttcggtctcgaagatgatcaatatgatgaggaagataaagaagaaatc
tcgtcaaaactttggcaagaagcctgctggattctcatcaacgcatactttgatgaaaaa
ggacttgtacgacaacaactggatagcttcgatgaatttattgaaatgtccgttcagcgt
attgtggaggattcaccacagattgaactacaggcggaggcgcagcacaccacaggcgag
atagaaaagcctgtgaagcatttgttgaaatttgagcagatttacctgtcgaagccaacc
cattgggaaaaagatggtgcaccgtctcctatgatgcccaatgaagctagattgagaaat
ttaacatattccgcgccattgtacgtggatatcactaagacgatcgagaaggacggtgaa
gacccagttgagacgcaacatcaaaaaacatttataggcaaaattccgattatgttgaga
tcaaagtattgtttacttgccggcttatccgatcgtgatttgacggaattgaacgaatgt
ccgctggatcccggcggatattttattattaatggttcggagaaagtccttatagctcag
gaaaaaatggcgacaaatactgtctacgtattcagcatgaaagatggtaagtatgcttac
aaggcagaaatacgctcatgcttggaacacagctcccgtccaacttcgactctatggatc
aatatgatggccaagagcggtgctagtattaaaaagtctgctataggccaacgcatcatc
gccattattccttacatcaagcaggaaatccccataatggtggtttttcgagcactcgga
tttgtagctgatcgcgatatcctcgaacatattatttacgatttcgacgaccccgagatg
atggaaatggtgaagccatccttggatgaagcttttgtcatacaggaacagaacgtcgct
ttgaattttatcggtactagaggcgccaagccaggagtaacaaaggaaaagcgaattaaa
tatgcccgagaaatcttacaaaaggaaatgctgcctcacgttggcataagcgatttctgt
gaaaccaagaaggcatatttccttggctacatggtccatagattattgtcggcatctcta
ggacgaagggaattggacgaccgcgatcattacggtaataaaagattggacttggccggg
cctctgttggcatttttgttccgaggtttgttcaaaaacctaatgaaggaggtacgtttg
tacgcacagaagttcatagatcgagggaaggactttaatctcgagctggccatcaagacg
aaaattataacggacggtctgagatactcgcttgccacgggtaactggggcgatcaaaag
aaggcgcatcaggcgagagcaggtgtatcacaggtattgaataggttgaccttcgcatcg
acactgtcgcatctaagacgagtgaattcgcctattggaagagatggtaaacttgccaaa
ccacgtcaattgcacaacacgttatggggtatgctctgccccgcggagactcctgagggt
gccgctgtaggattagtgaaaaatctagccctgatggcgtatataagcgttgggtcgcag
ccatctcctattctggaattcttggaggaatggtccatggagaatctggaagagatagca
ccgagcgcaatcgccgatgctacgaagatattcgttaacggatgttgggttggcatccac
cgagatccggatcaattgatggccactttacgcaaattgagaaggcagatggatattatc
gtgtcggaagtatcgatggtccgcgacattagagaccgtgagataaggatatacacggat
gctggcagaatcagcagacctttgctcatagtggaaggtcaaaatttattactacagaca
agacatattaacatgttgaaggaaagagattacaacaatgatgggtggcaagaattggta
ggtagcggagtagtggaatatatagatactctggaggaagaaactgttatgatagctatg
tcacccgatgatctcagacaagagaaagagtatgcatattgtacgacgtacacgcactgc
gagatccatccagcgatgattttaggtgtgtgcgcttccattataccgttccccgatcat
aatcagagtcctaggaacacttatcagagcgctatgggtaaacaagctatgggtgtatac
attacaaactttcacgtgcgcatggacactttggctcatgtactgtattatcctcataaa
ccattggttacaacgagatctatggaatatcttagatttcgtgaattaccggccggcatt
aacagcattgttgcaatcctgtgttacacgggatacaatcaagaggatagcgttatcctg
aatgcgagtgccgttgagaggggtttcttcagatcggtgttttatcgttcttataaggaa
tctgaatcgaagaaaattggcgatcaggaggaacaattcgagaaaccctcgcgcttaact
tgttcagggatgcgcaacgctatatatgacaaattggacgatgacgggatcattgcgcct
ggaattcgagtatctggtgacgatgtaatcataggaaaaacgataactttaccagagacg
gatgacgagctggacagtacaacaaaacgttttacgaaacgtgacgcgtcgactttcttg
cgaaacagcgagaccggtattgttgatcaggtgatgttgacgttgaatagcgaaggatat
aaattctgcaagatccgagtgcgcagtgtacgtattccgcaaatcggcgacaaatttgca
tcgcgtcacggacaaaagggtacatgcggaattcagtacagacaagaagacatgcctttt
tcttccgaaggtcttacacccgacattattatcaatcctcacgctatcccttctcgtatg
actattggtcacttgattgaatgcattcaagggaaagtttctgccaataaaggagagatt
ggtgacgctactccgtttaatgacgctgtgaatgtgcaaaagatttccacgcttttgcaa
gaatatggttatcatttgcgagggaatgaagtgatgtataacggacatacgggtcgtaag
atcaacgcgcaagtctttttaggaccgacgtattatcaacgtttaaagcatatggtagac
gacaagatccatagtagagcaagaggacctgtacaaattttagttagacaacctatggag
ggacgagcgagggatggtggacttcgtttcggagagatggaacgagattgccaaatttct
cacggcgcagcgcaatttctacgagaacgtttgttcgaagtatcggatccatatagaatt
cacatatgtaatttctgtggtttaattgctatagcaaatttgcggaataatactttcgaa
tgcaaaggttgtaaaaacaagacgcaaattgcacaaattagactgccgtatgcggcgaag
ttacttttccaggaactaatggcaatgaatatcgcacctagactcatgacactttaa
DBGET
integrated database retrieval system
