Trachymyrmex cornetzi: 108761127
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Entry
108761127 CDS
T11212
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tcz
Trachymyrmex cornetzi
Pathway
tcz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108761127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcz03041
]
108761127
Enzymes [BR:
tcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108761127
Spliceosome [BR:
tcz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108761127
Complex B
108761127
Complex C
U2 SnRNP specific factors
108761127
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
MscL
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108761127
NCBI-ProteinID:
XP_018362991
UniProt:
A0A151JR60
LinkDB
All DBs
Position
Unknown
AA seq
767 aa
AA seq
DB search
MSYHRGSGNKPKGFGFSGFQMSGTKRSGTNIPPPPPNSTLSKQGYHTMNAITENALSACW
GMPKKRSKTEEEYFEDDDEPPTSSLEYIPAPGSPTYDLMKKSATKDDSDSEEDTLDAFMA
GIDAEVKRNSYAAQSGDNRKEDKSKGIRADIDGEDDEESYYRYMEENPTAGLQQEESDQE
IEYDEDGNPIAPPKKKEIDPLPAIDHSEIEYESFEKNFYNVHEEIASLSKQQIDDLKKTL
GIKVSGPSPPNPVTSFGHFGFDDPLIKAIRKNEYTQPTPIQAQAIPAALSGRDIIGIAKT
GSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCC
CYGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEP
QVRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFH
NNPSGKWNWLLQNLVEFLSAGSLLIFVTKKLNAEELSNNLKLKEFEVLLLHGDMDQIERN
KVITAFKKKEVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTA
YTLVTEKDKEFAGHLVRNLEGANQEVPKSLIDLAMQSAWFRKSRFKGGKGKSLNVGGAGL
GFRGRPNSSNSGGSTSQASKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRASSDH
TWEQTITPPSVIMPPPPTVPPKPATEDNQASNSAGPERKRVRKSRWE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcatcgaggaagtggtaacaagccaaaaggctttggcttcagtggcttccaa
atgtctggaacaaaaagaagtggcacaaacatacctccacctccaccaaactctaccctg
agcaaacaaggctatcacacgatgaatgccattacggaaaatgccttgtccgcatgttgg
ggtatgcctaagaaacgcagcaagaccgaggaagaatactttgaagacgatgacgaacct
ccaacttcatcgttggaatatatacccgcgcctggttctcccacatacgacttgatgaag
aaatcggcaacaaaggatgacagcgatagtgaggaggatactctggatgctttcatggca
ggtattgatgcagaagtgaagcggaacagttacgcggctcagagtggtgataatcgtaaa
gaagataaatctaaaggaattcgggcagatattgatggagaagacgatgaggaaagttac
tacaggtatatggaagaaaatccaactgctggtttgcaacaagaagaatccgatcaagag
attgaatatgatgaagacggcaatcccattgcaccaccgaagaagaaggagatcgatcca
ttacctgcaattgatcatagtgaaatagaatatgaatcgttcgagaagaacttttacaac
gtgcatgaagaaattgcaagtttaagcaaacagcagatcgatgacttaaaaaagactctg
ggtataaaagtatccgggccgtctccgccaaatccggtaacgagtttcggtcattttggc
tttgacgatcctttgattaaagctatccgtaaaaacgagtacacacagcctacgcctatt
caagcgcaggcgattcctgctgccttaagcggacgggatataataggtatagcaaaaact
ggtagcggtaaaacagcagcatttatctggccgatgttagtgcacattatggatcaacgc
gaattgaaagctggagatggcccgattggtctgattttggcgccaacgagagaattgtct
caacagatttatcaagaagcaaagaaatttggaaaagtttacaatattcaagtatgttgc
tgctatggaggtggcagcaaatgggaacagagcaaagcattagaaagcggcgcagagatt
gtagtcgctacccctggtagaatgatcgatctagttaaaatgaaagcaacgaatttaact
agagttacatttctagttctggatgaagctgatagaatgttcgacatgggatttgaacca
caagtacgatctatatgtaatcatgtgagacctgacagacaaacattactatttagcgca
acattcaaaaagaaagtggagaagctcgctagagatgttttaacagatcctattaggata
gtacaaggagatgttggtgaagctaacaccgacgtaacgcaacatgttatcatgttccat
aataatcctagtggtaaatggaactggctgttacagaacttggttgaatttctaagtgct
ggcagtcttttgatctttgtcactaagaagctgaacgcggaagaactttccaacaatctc
aaactgaaagagtttgaagtattacttttgcatggtgatatggatcagattgagagaaat
aaagtgattacggcttttaagaagaaggaagtcagtaccttggtcgctactgatgtagca
gcacgaggcttggacattccacatatcaagactgtcgtaaattacgacgtagcgcgagat
atcgacacacatacacacagaataggaagaacaggacgagccggtgaaaaaggtacggcg
tatactcttgtgacggaaaaagataaggagttcgctggacatttagtgagaaatttggag
ggagcaaatcaggaagtgccaaagagcttgatagatctggctatgcaaagcgcatggttc
agaaaatcaagatttaaaggtgggaaaggaaagagtttaaatgttggtggagcaggactt
ggtttcagaggcagacccaattcgtcgaattcgggtggatcgacatcgcaagcatccaag
gatatcagcgaggtagttaaaaaattagaaagacatggacctggtagcgacagactctct
gctatgaaagctgcttttcgaagtcaatataattcccagttccgagcgtcatcagatcac
acttgggaacagacgatcactccaccttccgtgataatgccgcctccaccaaccgttcca
ccgaaacctgcaaccgaagataatcaagcttccaattccgcgggaccggaacgtaaaaga
gtgcgaaaaagtcgatgggaatga
DBGET
integrated database retrieval system
