Trachymyrmex cornetzi: 108761777
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Entry
108761777 CDS
T11212
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108761777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108761777
Enzymes [BR:
tcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108761777
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108761777
mRNA degradation factors
3'-5' decay
Ski complex
108761777
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
nSTAND3
PhoH
DUF3516
Motif
Other DBs
NCBI-GeneID:
108761777
NCBI-ProteinID:
XP_018363998
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MAESTQLFAGPPPIWPDIRSELREYIECPERLPIHQLDNTQCYWPRKPDVLSLLEFDLAP
VNTTLKFDRDPITGKIGEIQEIDLQGAGETARNSMSMTRAPGLLTDGVRGNPSNIPFWPG
GFEEPKVPKTESIDDIDFEKDLRTLAKGFSSGLEFKSDNCTPINCMRYEVEASVLEETEK
LIINNDNINLMAVVHEEGNLLGSWSSVEEPKKESVQAVDNNIPFIDNSILPKETNIPVLK
ISETQIELTKAEWAEQLDVSAPVTDFNKRIPDPAITFSYELDTFQKQAILKLEENSNVFV
AAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLLTGDLQIN
QTASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQNINI
VMLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVLDSN
SQFLLDGWYKATNASDKKKDKSSKDCRRKIQMTPKQEEVLWRAFVSHLQNNDMLPVVVFT
LSRKRCDMNAVTFRNLDLTTAREKHQVHVFFQHNIKHLKGSDRELPQVLMMQELLEKGVG
IHHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKYDGNNFRTLF
PTEYIQMAGRAGRRGHDTTGTVIVMCRHDVPHFNDLKPMMCGEPQTLESKFKVTYSMLLN
LRRVNESVTVEAMMRKSFKESPLASQEASYNNELRKIERELLNLPPLTEIQKKLSTFYHQ
AVDYLEDVKFLNPYLLTSKKAAKSLIEGRVLLISYADHCNKLALLLQVLYHKSSTQYKVL
ILKDANVSTSETTDFKSSQIFEKWCEIISLTKKEIFVPSVNPSHEVLTLFPWHILKITNC
QIKIDCSLVLNDWEKRQISRFKNDPPGQTCQTAVQELTSLSFNASTNARILQPYIEPSSK
NDFQLRIQHRNKLKASLNDMKCMEIPNFEEQFRPVFERNHLEDKKRQLQLKLSDEGMALY
PDYLNMVALLKHFRYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQPAEIAALL
SALIFQQRTDVEPQLTPTLANACKIMNEVHAELEHLEQYYQLSTLLPLNFGLVEVVYEWA
QAKSFAEIMKMTDVQEGIIVRCIQQLGETLRDVKNAAVTIGDPILKEKMEEASTAIKRDI
VFAASLYTQD
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatcgacgcagttatttgctgggcctccacccatttggcccgatattagatca
gaactgcgagaatatattgaatgccctgaacgattacctatacatcaactggacaatact
caatgttattggccacgtaaaccagatgtcctttccttgctagaatttgatttagctccc
gttaatactacgcttaaatttgatcgtgatccaataacaggcaagatcggtgagatacaa
gaaattgacttacaaggtgcaggggaaacggcaagaaattctatgtctatgactcgtgcc
cctggattacttacagatggagttcgaggtaatcctagcaatattccattttggcctggt
ggttttgaagaacctaaagtgcctaaaactgaaagcatagatgatatcgactttgagaaa
gatttaaggacattagccaaaggatttagctcaggtttagaatttaaaagtgacaattgt
acaccaatcaattgcatgagatatgaagtagaagcttcagtattagaagaaactgaaaag
ttaataatcaataatgataatataaatttaatggctgttgtacacgaggagggaaatttg
cttggttcatggtcttcagttgaagagccgaaaaaagaaagtgttcaagctgtggataat
aacattccctttatagacaattccattttacccaaagaaacaaatatacctgtcttgaaa
atatccgagacacaaatagaacttacaaaggcagaatgggcagaacagctggatgtatcc
gcaccagtaacagattttaacaagagaatacctgatccagcaattacattcagttatgaa
ctagacacttttcaaaagcaagctattcttaaattggaagagaatagcaatgtctttgtt
gctgcacacacatcagcaggaaaaactactgttgctgaatatgccattgcattgagccaa
aagcatatgacaagagtgatttatacgtcccccataaaagctctgtcaaatcagaaatat
cgtgattttaagagaaaatttgaaagtgttgggttattaacaggtgatttgcaaataaat
caaactgcttcatgtctaatcatgacaacagagatcttacaatcaatgttgtattgtgca
tccgatgttttacgagatttagaatttgtcatatttgatgaagtgcattatataaataat
gaagataggggtcacgtatgggaagaaatagtcattcttttaccacagaatattaatata
gtaatgttatctgcgacagtgccaaatccaataatattcgcggattgggttggtcgcatc
aaaaaacgaaaaatgtacgtgattagcactttgaaaagaccaatacctctcttacattac
ctgtatactggcactgatggtaagactaaggatgataagttcttagttcttgatagcaac
agccaatttttattggatggatggtacaaagcgacaaatgcatccgataaaaagaaagac
aaatcttcaaaggattgtaggagaaaaattcagatgacgccgaaacaagaagaagtatta
tggagagcatttgtaagccaccttcagaacaatgacatgttacccgttgtcgtatttact
ctatcgaggaaacgctgtgatatgaatgctgtcacgttcagaaatctcgatttaacgacc
gcgagagaaaaacatcaggtacatgtatttttccaacataacataaaacacctaaagggt
agcgatagagaattaccacaagtacttatgatgcaagagctcctggaaaaaggtgtgggt
atacaccacagtgggatattaccaattttgagagagatcgtagaaatgttatttcaaagt
ggagttgtcaagttactattcgcgacagaaacttttgccatgggagttaacatgccggcg
cgcacagtagtgtttgattccatacgaaaatatgacggaaacaactttcgtactctattt
ccaactgaatatatacaaatggctggccgtgccggacgacgaggtcacgacactacgggt
actgttatagtgatgtgcagacacgacgtgccgcacttcaacgacttgaaacctatgatg
tgcggtgaaccacagacattggagtcgaaatttaaagtcacgtactccatgcttcttaat
ttgagaagagtgaacgaatccgttaccgttgaagcgatgatgcgcaaatctttcaaggaa
tcgccgttggcctcgcaagaagcgtcctataacaacgaattacggaaaatcgaacgcgaa
ttattgaatttgccgcctttgaccgaaatccaaaaaaaactctctacattctatcaccaa
gcggtcgattatttggaagatgttaaatttctgaatccttatttgctcacctcaaagaag
gcagcgaaaagtttaatcgagggcagagttttgttaatatcgtacgcggatcattgcaat
aaactagctctgttattgcaagttttatatcacaaaagctctactcagtacaaagtcttg
atacttaaggacgcgaatgtatccacttccgaaacaactgattttaaaagttctcagata
ttcgaaaagtggtgcgagattattagcctaacgaaaaaggagatatttgtaccaagcgtt
aatccgtcacatgaagttttgactctgtttccatggcatatattaaagataactaattgc
cagataaaaattgactgctctttggtattgaatgattgggaaaagaggcaaatctcacga
ttcaaaaacgacccaccgggacaaacgtgtcagacagcggttcaagaattgacttcttta
tcatttaatgcttctactaacgctcgcattctacaaccatatatcgagccctcatcgaaa
aatgattttcaattaagaatacaacatagaaacaaattaaaagctagtctgaacgacatg
aaatgtatggaaataccaaactttgaagaacaatttagacctgtatttgaacgaaatcat
cttgaagataaaaagcgacagcttcaacttaaactcagcgatgaaggaatggcattgtat
ccagattatctgaatatggtagcactcctcaaacactttaggtacatagataatgatgaa
agagtcgccctcaaagggagagtcgcgctgcaaatgggtagtaacgaattgctgataaca
gaattgattctaaaaaatgtgttaactgttctacaaccggcagaaatagcagcgttacta
tcagcactgatcttccagcaacgcacggatgttgagcctcaactgacaccaactcttgct
aacgcttgcaaaataatgaacgaggtgcacgcggaattggaacatctagagcaatactat
caactatcgacattactaccactgaatttcggcttagtggaagttgtctacgaatgggca
caggccaaatcattcgcagagatcatgaagatgactgatgtccaagaaggaattatagtc
cgttgcatacaacaattaggggaaacattacgagatgttaaaaatgcggctgtaaccata
ggtgacccgattttaaaagagaagatggaggaagcgtcaaccgcgatcaaacgtgacata
gtgtttgctgcgtccttatacacccaagactga
DBGET
integrated database retrieval system
