Trachymyrmex cornetzi: 108762318
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Entry
108762318 CDS
T11212
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108762318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108762318
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
108762318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
PIN_4
CSD2
Rrp44_S1
OB_HELZ2
OB_RNB
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
108762318
NCBI-ProteinID:
XP_018364763
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MLTTKVFFRKTKGGNIFKTVREHYLRDDIYCGSKTCMKCKARPRNMVLDMEDAGAKSSLI
PSPYFLVLDTNIILDQIDILEENVITNVIILQTVLEEIRHKSATVYKKLNHIIGNATRKF
FLFINEHHRETYIEREPGEKTNDRNDRAIRVAVKWYNTHLNSDDNNVNIVLLTDDVENKT
RAAEEGLFVVSMEDYIASLENASFLLDKLSKRSYSSDIQGPELFPCHLSPTEVHSGISSG
KLLQGTFLASRENFLEGNVNVEGREKPIFVQGRAHLNRAVDGDIVAVEMLPDDKWSSPSE
IVLEDEENTDAGDDAEDEEKALCKQSSSKMQEKIPTGKIVGIIRRKWRQYCGILQLSAIK
TNVRHLFVPAERKIPKIRIETRQAEILSKQRIIVALDSWPRNSRYPLGHFVRALGNIGDK
ETENEVLLLEHDVPHSRFSDAVLSFLPKLPWIITEADVVQREDLRHLDICSVDPPGCTDI
DDALHCRSLPNGNFDVGVHIADVSHFIRPGTALDKEAALRATTVYLVDKRIDMVPELLSS
NLCSLRGKEERFAFSCIWEIDPDANITNTRFCKSIICSRQAMTYEEAQLKIDDAIQQDAI
AKSLRGLNQLAKKLKKKRLENGALTLASPEIRFQVDSETHDPVDVEAKKLRDTNSMVEEF
MLLANISVAEKILAEFPECAMLRRHPEPPQSNFEPLIKAAKNQGFIINTSTGKEFARSLE
ETQKESNPYFNTMLKILATRCMLQAVYFISGMHQPEEFKHYGLACPIYTHFTSPIRRYAD
IIVHRLLAVCIGADATYPELLDKKKNHLLCHNLNYRNRMAQYAGRASVALHTHIFFRNKI
QDEEGYILFVRKNALQVLIPKYGLEGTLYLNNSASPSVTFVHNSEDQSQTCGDVVFRAFD
PVVIQMSLDSSNVQHEKLFFKLVKPEIPNFSVPPLNTSDTEENSTKETLKRKSEIKEESS
NVHNKKAGKKKKKKN
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaacgaaggtttttttcagaaaaacaaagggagggaatatatttaagactgtc
agagaacactatctcagagatgacatttactgtggctctaaaacatgtatgaagtgcaaa
gcgaggcctcggaatatggtattggatatggaagacgctggtgctaagtcttccttaatt
ccaagtccatattttcttgtacttgatacaaatataattctggatcaaatagacatactg
gaggaaaatgttattaccaatgtgatcatcttgcaaacagtattggaagagattcggcat
aaaagtgcgactgtatataaaaaattaaatcatattatagggaatgcaacaagaaaattt
tttttattcatcaatgaacatcatcgggaaacttatattgaaagagaaccgggtgaaaag
acaaacgatcgtaatgacagagcaatacgagttgcagttaaatggtacaatacccatttg
aattctgatgataacaacgtaaatattgttttgttaacagacgatgtagaaaataaaaca
cgtgcagctgaagagggactatttgttgtatcgatggaagattatatcgcgtcgttggaa
aatgcaagttttctgctggataaattatctaaacgttcttactcttcggatattcaaggc
ccagaattatttccctgccatctgtcacccacggaagtgcacagcggcatatcgtctgga
aaattgttgcaaggaacatttttggcatcaagagaaaattttcttgaaggaaatgtgaat
gtcgaaggcagagaaaaacctatatttgtgcaaggacgagctcatctcaacagagcagtc
gatggtgatatagttgcggttgaaatgctgccagatgataagtggtcatcacctagtgaa
attgttttggaagatgaagaaaatacagatgctggcgacgacgcagaagatgaagagaaa
gcactctgcaaacagagttcgtcaaaaatgcaagagaagataccaacgggtaaaattgtc
ggtattatcaggagaaaatggagacaatattgtggaatactgcagctaagtgcaattaaa
acgaatgtaaggcacttgtttgtgccggctgagagaaaaattccaaaaataagaattgaa
actagacaggccgagatactgagtaagcagagaattattgtcgcactagattcatggcca
cgaaattcgagatacccacttggtcactttgtacgagcacttggtaatataggagataaa
gagacggaaaatgaagtattacttttggagcacgatgttccacacagccgtttctctgat
gctgttcttagctttcttccaaagctgccatggatcattacggaagcggatgttgtgcaa
agggaagatcttcgacatttagacatctgttctgtggatccgccaggctgtactgacatt
gacgatgcgttacattgtagaagtttaccaaacggtaatttcgatgttggtgtgcatatc
gcagatgtatctcactttataaggcctgggactgcactggacaaagaagcagcgttacgc
gctactactgtatatcttgtcgataaacgaatcgacatggttccagaattacttagctcg
aatctctgttctttgcggggtaaggaagaacgatttgcattttcctgtatatgggaaatt
gaccctgatgcaaatataactaatacgagattctgcaaatctataatttgctcgcgtcaa
gcaatgacatatgaagaagctcaattgaaaattgacgatgctattcagcaagatgctatc
gcgaagtcattgagaggattaaatcagttggcaaagaaattaaaaaagaaacgtctagaa
aatggtgctttaactttagcatcaccggagatacgtttccaagtagatagcgaaacgcac
gatcccgttgatgtagaagcaaaaaagttgcgagacactaattctatggtggaggaattt
atgctgcttgcaaatattagtgttgctgaaaaaatattagcagaatttccagaatgcgct
atgttgagaagacaccctgaaccaccacaaagtaattttgaaccgttgattaaagctgct
aaaaatcagggttttattattaatacaagtaccggtaaggaatttgcccgatcattggaa
gaaacacaaaaggaatcgaatccctatttcaacacaatgttaaaaatattagctacgcga
tgtatgttgcaagcagtatattttatcagtggaatgcatcagccggaagaatttaagcat
tatggattggcgtgtccaatttacacgcattttacatctcctattcgaagatatgcagat
ataattgtgcatcgactgttagctgtatgtataggtgctgatgcaacttatccagagcta
ttggataagaagaagaatcacttgttatgccataatctgaattatcggaatcgaatggcg
caatatgctggccgagcatcagttgcacttcacacacacatattcttccgtaacaagatt
caagatgaggaaggatatattctttttgtacgcaaaaatgctttgcaagtgcttataccg
aagtatggtttggaaggcactttgtatctaaataattctgcttcaccgtctgtcacgttc
gtacataattcagaggatcaatcccaaacttgcggggatgttgtatttcgagcatttgat
cctgttgttatacaaatgagtttggacagttctaatgtacaacatgaaaaattatttttt
aaactcgtaaaaccagagattccaaattttagcgttcctccattaaatacaagtgacacc
gaagaaaattctactaaggaaacgttgaaacggaagtcagaaattaaagaagagtcatct
aatgttcataataagaaagccggaaagaaaaagaagaaaaagaattga
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