KEGG   Trachymyrmex cornetzi: 108762319
Entry
108762319         CDS       T11212                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tcz  Trachymyrmex cornetzi
Pathway
tcz03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tcz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108762319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcz03021]
    108762319
   03036 Chromosome and associated proteins [BR:tcz03036]
    108762319
Transcription machinery [BR:tcz03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108762319
   Coactivators
    SAGA/TFTC/STAGA complex
     108762319
Chromosome and associated proteins [BR:tcz03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108762319
    STAGA complex
     108762319
    TFTC complex
     108762319
    SAGA complex
     108762319
    SLIK complex
     108762319
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz EIF3I TFIID_NTD2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_RIG_2nd CFAP251_N WDR90_beta-prop_4th Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_WDR19_1st Beta-prop_HPS5 DSE1_N Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_DCAF4 Tricorn_2nd WD40_like RMC1_N TRM82_WD Beta-prop_VPS8 Beta-prop_DCAF12 eIF2A Cytochrom_D1 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 108762319
NCBI-ProteinID: XP_018364764
LinkDB
Position
Unknown
AA seq 588 aa
MKMKRMKSEVISATIESYLKRRHYQTHDYRKGDQLFCQNSDQTTLNATAECGTSQDNSIV
FSAITIDIAAADQAYQRLKKWMSVVLNEKLRIELQGLLYPIFCHLYLEMLHAGNRQAAIQ
FLKTHQNEFMSDTEKDFLEELSSVFSVQDIELRPLVNAFRTRKYKVDLSESAHICLRQYL
TKYGHITLMQIINTHITIIRKTGSLQMDREVPEEKSQRYETSINGHVEQPSGTGVDREMR
ELQEAIRLIQHNSHQALRLFTVKNAIENASCGLIAPKMDKLAVGFSTAEIRLWAIGDTVL
VKKNDKQTCVPSTCDISPFYKFNEQESTVRSEAGAIILRGHTDVVHDLRFIPEVDILLSV
SSDKDMRAWKLNNYSCTAIYSGHSYPIWCMDTSVFNLYIGTGSHDRTAKLWSLDRTFPLR
IFAGHFLDVNCIKFHPNARYLATGSADKTVRLWSKDDGNLLRVYVGAQSTIYTLAFSPDG
KYLAAAGDDKSIYIWDLATNGLLTELKGHKDTIMNVDWSLDNQYIASASLDGIVRLWPTQ
DFIKTLNGGSSSAMLQSETPQIYSTYCSSILSLSYYKKSNSLICIGTK
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgaagatgaagcggatgaagagcgaggtgatcagcgcgacgatcgagtcttacctaaaa
cggcgtcattatcagacccacgattatcgtaagggcgatcagttgttctgtcagaacagc
gatcagacgacgttgaacgcaaccgcggagtgcggcacctcgcaggacaactcgatcgtt
ttcagtgccatcaccattgacatcgccgcggcagatcaggcatatcagcgattgaagaaa
tggatgagcgtcgtactcaacgaaaaattacgaatagaattacaaggacttttgtatccg
atattttgtcatctttatttagagatgttacatgctggtaaccgccaagctgcaatccaa
ttcctaaagacgcatcagaacgagtttatgagtgatacagagaaagacttcttagaggaa
ttatctagtgtattttcggtgcaagacattgagctgaggcctttggtaaatgcattcaga
actagaaagtataaagtagatctgtccgagtcggcacatatttgtttgagacaatatctt
accaaatatggacacataacattaatgcagattataaatacacacatcacaataattaga
aaaacaggcagccttcaaatggatagagaagtacctgaagagaaaagtcaaagatatgaa
acgagtattaatggtcatgtggaacaaccatctggtactggtgtggatcgtgaaatgagg
gaattacaggaagctatacgattgatacaacataattctcatcaagcactaagattattt
acagtgaaaaatgctatagaaaatgcaagttgcggtcttattgcacctaaaatggataag
ttagctgtaggttttagtacagctgaaatacgtttgtgggctataggcgatacagtattg
gtcaagaaaaatgataagcaaacgtgtgttccgtctacctgtgatatatcaccattttat
aaattcaacgagcaagaaagcacagtaagaagcgaagcaggggccataatattaagagga
catacggatgtagtacacgatttaagatttattccagaggtagatattcttctttctgta
tcgagcgacaaagatatgagagcatggaaactcaataattactcatgtacagcaatatat
agcggtcatagctatcctatatggtgcatggataccagtgtgttcaatttatatatcggc
acaggctcacatgacagaactgcaaaattatggtcattggatagaacatttcccttgaga
atatttgcaggtcattttttagatgtcaattgcataaaatttcatccaaacgcaagatac
ttagcgactggttccgctgataaaactgtaagattatggtcaaaagatgatgggaatcta
ttgcgagtatatgttggagcgcaatcgactatttacactttagcttttagtccagatggc
aaatatctggctgctgcaggtgacgataagtctatatatatatgggatttagcaactaat
ggtttactgactgaattgaaaggtcataaagatacaatcatgaatgtagattggagttta
gataaccaatatatcgccagtgcaagtttagacggaatcgtacgactgtggcctactcaa
gatttcatcaaaacgttgaatggaggatcgtcaagtgctatgttgcaatcagaaacgcca
caaatttattcaacatattgctcaagcattctctcattgagttattacaaaaaaagcaat
tcgttaatttgtatcggtactaagtaa

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